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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
1077820-1077866
(+)
mini-ykkC
1077886-1078204 (+)
Meso_0982
Meso_0982
Single gene
DOOR ID:
1835247
Meso_0982
View Structure
2
1340806-1340984
(-)
cobalamin
1338747-1340625 (-)
Patl_1110
TonB-dependent receptor
Patl_1110
Single gene
DOOR ID:
1830735
Patl_1110
View Structure
3
1380226-1380370
(-)
cobalamin
1379201-1380113 (-)
Patl_1141
ABC transporter related protein
Patl_1141
Operon
DOOR ID:
204331
Patl_1140,
Patl_1141
View Structure
4
1619302-1619406
(+)
TPP
1619480-1621544 (+)
Patl_1344
TonB-dependent receptor
Patl_1344
Operon
DOOR ID:
204366
Patl_1344,
Patl_1345,
Patl_1346,
Patl_1347
View Structure
5
2337564-2337664
(+)
TPP
2337719-2339606 (+)
Patl_1931
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Patl_1931
Operon
DOOR ID:
204466
Patl_1931,
Patl_1932,
Patl_1933,
Patl_1934
(thiG)
,
Patl_1935,
Patl_1936
View Structure
6
2608595-2608745
(-)
MOCO
2607600-2608569 (-)
moaA
GTP 3';8-cyclase (2) (Molybdenum cofactor biosynthesis protein A)
Patl_2160
Operon
DOOR ID:
204506
Patl_2159,
Patl_2160
(moaA)
View Structure
7
2932691-2932803
(+)
yybP-ykoY
2932886-2933438 (+)
Patl_2409
Patl_2409
Single gene
DOOR ID:
1831372
Patl_2409
View Structure
8
4699803-4699840
(+)
SAM-SAH
4699843-4700320 (+)
Patl_3900
Patl_3900
Single gene
DOOR ID:
1832017
Patl_3900
View Structure
Genome:
Pseudoalteromonas atlantica T6c
(
NC_008228.1
);
Phylum:
Gammaproteobacteria
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