About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
132735-132997
(+)
cobalamin
133065-134961 (+)
btuB
Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
YPA_0112
Operon
DOOR ID:
202046
YPA_0112
(btuB)
,
YPA_0113
View Structure
2
1219676-1219822
(+)
MOCO
1220889-1221369 (+)
moaC
Cyclic pyranopterin monophosphate synthase (7) (Molybdenum cofactor biosynthesis protein C)
YPA_1067
Operon
DOOR ID:
202243
YPA_1066
(moaA)
,
YPA_1067
(moaC)
,
YPA_1068
(moaD)
,
YPA_1069
(moaE)
View Structure
3
1279072-1279271
(-)
yybP-ykoY
1278491-1279061 (-)
YPA_1126
Putative manganese efflux pump MntP
YPA_1126
Single gene
DOOR ID:
1825924
YPA_1126
View Structure
4
2580615-2580719
(-)
TPP
2579690-2580491 (-)
YPA_2299
Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase (Putative phosphomethylpyrimidine kinase)
YPA_2299
Single gene
DOOR ID:
1826441
YPA_2299
View Structure
5
2792665-2792728
(+)
fluoride
2792828-2793212 (+)
YPA_2503
Putative fluoride ion transporter CrcB
YPA_2503
Single gene
DOOR ID:
1826519
YPA_2503
View Structure
6
3475580-3475769
(-)
FMN
3474684-3475338 (-)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
YPA_3133
Single gene
DOOR ID:
1826765
YPA_3133
(ribB)
View Structure
7
3995978-3996115
(+)
TPP
3996189-3997182 (+)
tbpA
Thiamine-binding periplasmic protein
YPA_3573
Operon
DOOR ID:
202739
YPA_3573
(tbpA)
,
YPA_3574
(thiP)
,
YPA_3575
(thiQ)
View Structure
8
4047435-4047560
(+)
TPP
4047693-4049739 (+)
YPA_3611
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
YPA_3611
Operon
DOOR ID:
202748
YPA_3611,
YPA_3612,
YPA_3613,
YPA_3614,
YPA_3615
(thiG)
,
YPA_3616
(thiH)
View Structure
9
4606984-4607030
(+)
mini-ykkC
4607047-4607365 (+)
ECP_4394
ECP_4394
Single gene
DOOR ID:
1834748
ECP_4394
View Structure
Genome:
Yersinia pestis Antiqua
(
NC_008150.1
);
Phylum:
Gammaproteobacteria
a:10:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_008150.1";i:2;s:24:"Yersinia pestis Antiqua ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"132735-132997";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"133065-134961";i:10;s:1:"+";i:11;s:4:"btuB";i:12;s:89:"Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)";i:13;s:8:"YPA_0112";i:14;s:6:"Operon";i:15;s:6:"202046";i:16;s:23:"YPA_0112(btuB);YPA_0113";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_008150.1";i:2;s:24:"Yersinia pestis Antiqua ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1219676-1219822";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"1220889-1221369";i:10;s:1:"+";i:11;s:4:"moaC";i:12;s:91:"Cyclic pyranopterin monophosphate synthase (7) (Molybdenum cofactor biosynthesis protein C)";i:13;s:8:"YPA_1067";i:14;s:6:"Operon";i:15;s:6:"202243";i:16;s:59:"YPA_1066(moaA);YPA_1067(moaC);YPA_1068(moaD);YPA_1069(moaE)";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_008150.1";i:2;s:24:"Yersinia pestis Antiqua ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1279072-1279271";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1278491-1279061";i:10;s:1:"-";i:11;s:8:"YPA_1126";i:12;s:35:"Putative manganese efflux pump MntP";i:13;s:8:"YPA_1126";i:14;s:11:"Single gene";i:15;s:7:"1825924";i:16;s:8:"YPA_1126";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_008150.1";i:2;s:24:"Yersinia pestis Antiqua ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2580615-2580719";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2579690-2580491";i:10;s:1:"-";i:11;s:8:"YPA_2299";i:12;s:97:"Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase (Putative phosphomethylpyrimidine kinase)";i:13;s:8:"YPA_2299";i:14;s:11:"Single gene";i:15;s:7:"1826441";i:16;s:8:"YPA_2299";i:17;s:42:"thiamine biosynthetic process [GO:0009228]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_008150.1";i:2;s:24:"Yersinia pestis Antiqua ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2792665-2792728";i:6;s:1:"+";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"2792828-2793212";i:10;s:1:"+";i:11;s:8:"YPA_2503";i:12;s:38:"Putative fluoride ion transporter CrcB";i:13;s:8:"YPA_2503";i:14;s:11:"Single gene";i:15;s:7:"1826519";i:16;s:8:"YPA_2503";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_008150.1";i:2;s:24:"Yersinia pestis Antiqua ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3475580-3475769";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"3474684-3475338";i:10;s:1:"-";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:8:"YPA_3133";i:14;s:11:"Single gene";i:15;s:7:"1826765";i:16;s:14:"YPA_3133(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_008150.1";i:2;s:24:"Yersinia pestis Antiqua ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3995978-3996115";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3996189-3997182";i:10;s:1:"+";i:11;s:4:"tbpA";i:12;s:36:"Thiamine-binding periplasmic protein";i:13;s:8:"YPA_3573";i:14;s:6:"Operon";i:15;s:6:"202739";i:16;s:44:"YPA_3573(tbpA);YPA_3574(thiP);YPA_3575(thiQ)";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_008150.1";i:2;s:24:"Yersinia pestis Antiqua ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4047435-4047560";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4047693-4049739";i:10;s:1:"+";i:11;s:8:"YPA_3611";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:8:"YPA_3611";i:14;s:6:"Operon";i:15;s:6:"202748";i:16;s:65:"YPA_3611;YPA_3612;YPA_3613;YPA_3614;YPA_3615(thiG);YPA_3616(thiH)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_008150.1";i:2;s:24:"Yersinia pestis Antiqua ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4606984-4607030";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"4607047-4607365";i:10;s:1:"+";i:11;s:8:"ECP_4394";i:12;s:0:"";i:13;s:8:"ECP_4394";i:14;s:11:"Single gene";i:15;s:7:"1834748";i:16;s:8:"ECP_4394";i:17;s:0:"";i:18;s:15:"View Structure ";}}
