Genome: Yersinia pestis Antiqua (NC_008150.1); Phylum: Gammaproteobacteria
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 132735-132997 (+)cobalamin133065-134961 (+)btuB

Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)

DOOR ID: 202046
YPA_0112 (btuB),
View Structure
2 1219676-1219822 (+)MOCO1220889-1221369 (+)moaC

Cyclic pyranopterin monophosphate synthase (7) (Molybdenum cofactor biosynthesis protein C)

DOOR ID: 202243
YPA_1066 (moaA),
YPA_1067 (moaC),
YPA_1068 (moaD),
YPA_1069 (moaE)
View Structure
3 1279072-1279271 (-)yybP-ykoY1278491-1279061 (-)YPA_1126

Putative manganese efflux pump MntP
YPA_1126Single gene

DOOR ID: 1825924
YPA_1126 View Structure
4 2580615-2580719 (-)TPP2579690-2580491 (-)YPA_2299

Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase (Putative phosphomethylpyrimidine kinase)
YPA_2299Single gene

DOOR ID: 1826441
YPA_2299 View Structure
5 2792665-2792728 (+)fluoride2792828-2793212 (+)YPA_2503

Putative fluoride ion transporter CrcB
YPA_2503Single gene

DOOR ID: 1826519
YPA_2503 View Structure
6 3475580-3475769 (-)FMN3474684-3475338 (-)ribB

3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
YPA_3133Single gene

DOOR ID: 1826765
YPA_3133 (ribB) View Structure
7 3995978-3996115 (+)TPP3996189-3997182 (+)tbpA

Thiamine-binding periplasmic protein

DOOR ID: 202739
YPA_3573 (tbpA),
YPA_3574 (thiP),
YPA_3575 (thiQ)
View Structure
8 4047435-4047560 (+)TPP4047693-4049739 (+)YPA_3611

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)

DOOR ID: 202748
YPA_3615 (thiG),
YPA_3616 (thiH)
View Structure
9 4606984-4607030 (+)mini-ykkC4607047-4607365 (+)ECP_4394

ECP_4394Single gene

DOOR ID: 1834748
ECP_4394 View Structure