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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
80500-80762
(+)
cobalamin
80830-82726 (+)
btuB
Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
YPN_0057
Operon
DOOR ID:
201267
YPN_0057
(btuB)
,
YPN_0058
View Structure
2
283231-283356
(-)
TPP
281051-283097 (-)
YPN_0227
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
YPN_0227
Operon
DOOR ID:
201303
YPN_0222
(thiH)
,
YPN_0223
(thiG)
,
YPN_0224,
YPN_0225,
YPN_0226,
YPN_0227
View Structure
3
486265-486402
(-)
TPP
485197-486190 (-)
tbpA
Thiamine-binding periplasmic protein
YPN_0397
Operon
DOOR ID:
201335
YPN_0395
(thiQ)
,
YPN_0396
(thiP)
,
YPN_0397
(tbpA)
View Structure
4
627242-627431
(+)
FMN
627672-628326 (+)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
YPN_0517
Single gene
DOOR ID:
1823876
YPN_0517
(ribB)
View Structure
5
1244213-1244276
(-)
fluoride
1243728-1244112 (-)
YPN_1081
Putative fluoride ion transporter CrcB
YPN_1081
Single gene
DOOR ID:
1824099
YPN_1081
View Structure
6
1452796-1452900
(+)
TPP
1453023-1453824 (+)
YPN_1278
Phosphomethylpyrimidine kinase
YPN_1278
Single gene
DOOR ID:
1824185
YPN_1278
View Structure
7
1686408-1686454
(-)
mini-ykkC
1686070-1686385 (-)
Patl_1403
Patl_1403
Single gene
DOOR ID:
1830855
Patl_1403
View Structure
8
2651885-2652084
(+)
yybP-ykoY
2652094-2652664 (+)
YPN_2369
Putative manganese efflux pump MntP
YPN_2369
Single gene
DOOR ID:
1824686
YPN_2369
View Structure
9
3199009-3199155
(-)
MOCO
3197461-3197941 (-)
moaC
Cyclic pyranopterin monophosphate synthase (7) (Molybdenum cofactor biosynthesis protein C)
YPN_2841
Operon
DOOR ID:
201800
YPN_2839
(moaE)
,
YPN_2840
(moaD)
,
YPN_2841
(moaC)
,
YPN_2842
(moaA)
View Structure
Genome:
Yersinia pestis Nepal516
(
NC_008149.1
);
Phylum:
Gammaproteobacteria
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