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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
359253-359353
(+)
ZMP-ZTP
359490-360738 (+)
glyA
Serine hydroxymethyltransferase (SHMT) (Serine methylase)
Bcen_0323
Operon
DOOR ID:
196211
Bcen_0323
(glyA)
,
Bcen_0324
(nrdR)
View Structure
2
580661-580798
(-)
yybP-ykoY
580009-580582 (-)
Bcen_0538
Bcen_0538
Single gene
DOOR ID:
1815149
Bcen_0538
View Structure
3
809928-810044
(-)
TPP
807871-809803 (-)
Bcen_0742
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Bcen_0742
Single gene
DOOR ID:
1815230
Bcen_0742
View Structure
4
1292169-1292404
(-)
cobalamin
1291249-1292059 (-)
Bcen_1174
Uroporphyrinogen-III C-methyltransferase (07)
Bcen_1174
Operon
DOOR ID:
196382
Bcen_1171,
Bcen_1172,
Bcen_1173,
Bcen_1174
View Structure
5
1294761-1295027
(+)
cobalamin
1295356-1296445 (+)
Bcen_1176
Cobalamin (Vitamin B12) biosynthesis CobW
Bcen_1176
Operon
DOOR ID:
196383
Bcen_1176,
Bcen_1177
(cobN)
,
Bcen_1178,
Bcen_1179,
Bcen_1180,
Bcen_1181
View Structure
6
1317331-1317522
(-)
cobalamin
1315860-1317309 (-)
Bcen_1194
Precorrin-3B synthase
Bcen_1194
Operon
DOOR ID:
196386
Bcen_1191,
Bcen_1192,
Bcen_1193
(cobH)
,
Bcen_1194
View Structure
7
2043833-2044082
(-)
cobalamin
2042675-2043791 (-)
Bcen_1844
Transport system permease protein
Bcen_1844
Operon
DOOR ID:
196531
Bcen_1843,
Bcen_1844
View Structure
8
2294173-2294321
(-)
FMN
2293343-2294054 (-)
Bcen_2077
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
Bcen_2077
Single gene
DOOR ID:
1815768
Bcen_2077
View Structure
9
2963870-2963993
(-)
TPP
2962507-2963644 (-)
Bcen_2697
Glycine oxidase (9)
Bcen_2697
Operon
DOOR ID:
196720
Bcen_2694,
Bcen_2695
(thiG)
,
Bcen_2696,
Bcen_2697
View Structure
10
3112718-3112836
(-)
SAH
3111266-3112685 (-)
Bcen_2835
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
Bcen_2835
Operon
DOOR ID:
196749
Bcen_2833,
Bcen_2834,
Bcen_2835
View Structure
11
3205337-3205470
(+)
glycine
3205553-3206672 (+)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
Bcen_2909
Operon
DOOR ID:
196760
Bcen_2909
(gcvT)
,
Bcen_2910,
Bcen_2911
View Structure
12
4425129-4425175
(-)
mini-ykkC
4424273-4424630 (+)
YPA_3926
YPA_3926
Operon
DOOR ID:
202812
YPA_3923,
YPA_3924,
YPA_3925,
YPA_3926
View Structure
Genome:
Burkholderia cenocepacia AU 1054 chromosome I
(
NC_008060.1
);
Phylum:
Betaproteobacteria
a:13:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_008060.1";i:2;s:45:"Burkholderia cenocepacia AU 1054 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"359253-359353";i:6;s:1:"+";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:13:"359490-360738";i:10;s:1:"+";i:11;s:4:"glyA";i:12;s:58:"Serine hydroxymethyltransferase (SHMT) (Serine methylase) ";i:13;s:9:"Bcen_0323";i:14;s:6:"Operon";i:15;s:6:"196211";i:16;s:31:"Bcen_0323(glyA);Bcen_0324(nrdR)";i:17;s:100:"glycine biosynthetic process from serine [GO:0019264]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_008060.1";i:2;s:45:"Burkholderia cenocepacia AU 1054 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"580661-580798";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:13:"580009-580582";i:10;s:1:"-";i:11;s:9:"Bcen_0538";i:12;s:0:"";i:13;s:9:"Bcen_0538";i:14;s:11:"Single gene";i:15;s:7:"1815149";i:16;s:9:"Bcen_0538";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_008060.1";i:2;s:45:"Burkholderia cenocepacia AU 1054 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"809928-810044";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"807871-809803";i:10;s:1:"-";i:11;s:9:"Bcen_0742";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:9:"Bcen_0742";i:14;s:11:"Single gene";i:15;s:7:"1815230";i:16;s:9:"Bcen_0742";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_008060.1";i:2;s:45:"Burkholderia cenocepacia AU 1054 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1292169-1292404";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1291249-1292059";i:10;s:1:"-";i:11;s:9:"Bcen_1174";i:12;s:45:"Uroporphyrinogen-III C-methyltransferase (07)";i:13;s:9:"Bcen_1174";i:14;s:6:"Operon";i:15;s:6:"196382";i:16;s:39:"Bcen_1171;Bcen_1172;Bcen_1173;Bcen_1174";i:17;s:84:"oxidation-reduction process [GO:0055114]; siroheme biosynthetic process [GO:0019354]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_008060.1";i:2;s:45:"Burkholderia cenocepacia AU 1054 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1294761-1295027";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1295356-1296445";i:10;s:1:"+";i:11;s:9:"Bcen_1176";i:12;s:41:"Cobalamin (Vitamin B12) biosynthesis CobW";i:13;s:9:"Bcen_1176";i:14;s:6:"Operon";i:15;s:6:"196383";i:16;s:65:"Bcen_1176;Bcen_1177(cobN);Bcen_1178;Bcen_1179;Bcen_1180;Bcen_1181";i:17;s:43:"cobalamin biosynthetic process [GO:0009236]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_008060.1";i:2;s:45:"Burkholderia cenocepacia AU 1054 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1317331-1317522";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1315860-1317309";i:10;s:1:"-";i:11;s:9:"Bcen_1194";i:12;s:21:"Precorrin-3B synthase";i:13;s:9:"Bcen_1194";i:14;s:6:"Operon";i:15;s:6:"196386";i:16;s:45:"Bcen_1191;Bcen_1192;Bcen_1193(cobH);Bcen_1194";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_008060.1";i:2;s:45:"Burkholderia cenocepacia AU 1054 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2043833-2044082";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2042675-2043791";i:10;s:1:"-";i:11;s:9:"Bcen_1844";i:12;s:33:"Transport system permease protein";i:13;s:9:"Bcen_1844";i:14;s:6:"Operon";i:15;s:6:"196531";i:16;s:19:"Bcen_1843;Bcen_1844";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_008060.1";i:2;s:45:"Burkholderia cenocepacia AU 1054 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2294173-2294321";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"2293343-2294054";i:10;s:1:"-";i:11;s:9:"Bcen_2077";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:9:"Bcen_2077";i:14;s:11:"Single gene";i:15;s:7:"1815768";i:16;s:9:"Bcen_2077";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_008060.1";i:2;s:45:"Burkholderia cenocepacia AU 1054 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2963870-2963993";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2962507-2963644";i:10;s:1:"-";i:11;s:9:"Bcen_2697";i:12;s:19:"Glycine oxidase (9)";i:13;s:9:"Bcen_2697";i:14;s:6:"Operon";i:15;s:6:"196720";i:16;s:45:"Bcen_2694;Bcen_2695(thiG);Bcen_2696;Bcen_2697";i:17;s:43:"D-amino acid metabolic process [GO:0046416]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_008060.1";i:2;s:45:"Burkholderia cenocepacia AU 1054 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3112718-3112836";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"3111266-3112685";i:10;s:1:"-";i:11;s:9:"Bcen_2835";i:12;s:73:"Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)";i:13;s:9:"Bcen_2835";i:14;s:6:"Operon";i:15;s:6:"196749";i:16;s:29:"Bcen_2833;Bcen_2834;Bcen_2835";i:17;s:96:"one-carbon metabolic process [GO:0006730]; S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_008060.1";i:2;s:45:"Burkholderia cenocepacia AU 1054 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3205337-3205470";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"3205553-3206672";i:10;s:1:"+";i:11;s:4:"gcvT";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:9:"Bcen_2909";i:14;s:6:"Operon";i:15;s:6:"196760";i:16;s:35:"Bcen_2909(gcvT);Bcen_2910;Bcen_2911";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_008060.1";i:2;s:45:"Burkholderia cenocepacia AU 1054 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"4425129-4425175";i:6;s:1:"-";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"4424273-4424630";i:10;s:1:"+";i:11;s:8:"YPA_3926";i:12;s:0:"";i:13;s:8:"YPA_3926";i:14;s:6:"Operon";i:15;s:6:"202812";i:16;s:35:"YPA_3923;YPA_3924;YPA_3925;YPA_3926";i:17;s:0:"";i:18;s:15:"View Structure ";}}