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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
1029007-1029226
(-)
cobalamin
1026973-1028830 (-)
Sala_1004
TonB-dependent receptor
Sala_1004
Operon
DOOR ID:
195356
Sala_1001,
Sala_1002,
Sala_1003,
Sala_1004
View Structure
2
1419387-1419449
(-)
SAH
1418634-1419138 (-)
Sala_1361
Transcriptional regulator; AsnC family
Sala_1361
Operon
DOOR ID:
195432
Sala_1360,
Sala_1361
View Structure
3
1625379-1625482
(-)
yybP-ykoY
1624714-1625287 (-)
Sala_1560
Membrane protein-like protein
Sala_1560
Single gene
DOOR ID:
1813791
Sala_1560
View Structure
4
1967796-1967902
(-)
glycine
1966617-1967742 (-)
gcvT
Glycine cleavage system T protein
Sala_1871
Operon
DOOR ID:
195548
Sala_1867,
Sala_1868,
Sala_1869,
Sala_1870,
Sala_1871
(gcvT)
View Structure
5
2492584-2492695
(+)
TPP
2492751-2494644 (+)
Sala_2370
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Sala_2370
Operon
DOOR ID:
195659
Sala_2370,
Sala_2371
View Structure
Genome:
Sphingopyxis alaskensis RB2256
(
NC_008048.1
);
Phylum:
Alphaproteobacteria
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