About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
620925-621066
(-)
FMN
620193-620844 (-)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
PSEEN0609
Single gene
DOOR ID:
1809602
PSEEN0609
(ribB)
View Structure
2
937494-937612
(-)
yybP-ykoY
936817-937405 (-)
PSEEN0905
PSEEN0905
Single gene
DOOR ID:
1809709
PSEEN0905
View Structure
3
1440491-1440711
(+)
cobalamin
1440821-1441433 (+)
PSEEN1378
Cob(I)yrinic acid a;c-diamide adenosyltransferase (7) (Cob(I)alamin adenosyltransferase) (Corrinoid adenosyltransferase)
PSEEN1378
Operon
DOOR ID:
1174182
PSEEN1378,
PSEEN1379,
PSEEN1380,
PSEEN1381
(cobD)
,
PSEEN1382,
PSEEN1383,
PSEEN1384
(cobU)
,
PSEEN1385
(cobT)
,
PSEEN1386,
PSEEN1387
(cobS)
View Structure
4
1485746-1485807
(-)
SAH
1479243-1483239 (+)
narB
Assimilatory nitrate reductase
PSEEN1417
Single gene
DOOR ID:
1809894
PSEEN1417
(narB)
View Structure
5
1636360-1636432
(+)
SAH
1637133-1637355 (+)
PSEEN1568
PSEEN1568
Single gene
DOOR ID:
1809973
PSEEN1568
View Structure
6
2096492-2096697
(-)
cobalamin
2094256-2096383 (-)
PSEEN2012
Putative outer membrane ferric siderophore receptor
PSEEN2012
Single gene
DOOR ID:
1810164
PSEEN2012
View Structure
7
2523859-2524084
(-)
cobalamin
2523566-2523752 (-)
PSEEN2431
PSEEN2431
Operon
DOOR ID:
1174366
PSEEN2426,
PSEEN2427
(cobM)
,
PSEEN2428,
PSEEN2429,
PSEEN2431
View Structure
8
2524145-2524344
(+)
cobalamin
2524444-2525512 (+)
cobW
Cobalamin biosynthesis protein CobW
PSEEN2432
Operon
DOOR ID:
1174367
PSEEN2432
(cobW)
,
PSEEN2433
(cobN)
,
PSEEN2434
View Structure
9
2693844-2694049
(+)
cobalamin
2694141-2694879 (+)
PSEEN2578
PSEEN2578
Single gene
DOOR ID:
1810402
PSEEN2578
View Structure
10
3280185-3280391
(+)
cobalamin
3280499-3281276 (+)
PSEEN3066
Putative Fe uptake ABC transporter; ATP-binding protein
PSEEN3066
Operon
DOOR ID:
1174477
PSEEN3066,
PSEEN3067,
PSEEN3068
View Structure
11
3719836-3719897
(-)
fluoride
3719385-3719763 (-)
crcB
Putative fluoride ion transporter CrcB
PSEEN3444
Single gene
DOOR ID:
1810764
PSEEN3444
(crcB)
View Structure
12
3779240-3779286
(-)
mini-ykkC
3778384-3778741 (+)
YPN_3314
YPN_3314
Operon
DOOR ID:
201894
YPN_3311,
YPN_3312,
YPN_3313,
YPN_3314
View Structure
13
3821246-3821303
(-)
SAH
3816572-3816977 (-)
PSEEN3543
Putative RNA polymerase-binding protein DksA
PSEEN3543
Single gene
DOOR ID:
1810798
PSEEN3543
View Structure
14
5282420-5282526
(-)
TPP
5280380-5282261 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
PSEEN4977
Single gene
DOOR ID:
1811319
PSEEN4977
(thiC)
View Structure
15
5348242-5348337
(+)
SAH
5348358-5349768 (+)
sahH
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
PSEEN5037
Single gene
DOOR ID:
1811346
PSEEN5037
(sahH)
View Structure
Genome:
Pseudomonas entomophila L48
(
NC_008027.1
);
Phylum:
Gammaproteobacteria
a:16:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_008027.1";i:2;s:28:"Pseudomonas entomophila L48 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"620925-621066";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"620193-620844";i:10;s:1:"-";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:9:"PSEEN0609";i:14;s:11:"Single gene";i:15;s:7:"1809602";i:16;s:15:"PSEEN0609(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_008027.1";i:2;s:28:"Pseudomonas entomophila L48 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"937494-937612";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:13:"936817-937405";i:10;s:1:"-";i:11;s:9:"PSEEN0905";i:12;s:0:"";i:13;s:9:"PSEEN0905";i:14;s:11:"Single gene";i:15;s:7:"1809709";i:16;s:9:"PSEEN0905";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_008027.1";i:2;s:28:"Pseudomonas entomophila L48 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1440491-1440711";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1440821-1441433";i:10;s:1:"+";i:11;s:9:"PSEEN1378";i:12;s:120:"Cob(I)yrinic acid a;c-diamide adenosyltransferase (7) (Cob(I)alamin adenosyltransferase) (Corrinoid adenosyltransferase)";i:13;s:9:"PSEEN1378";i:14;s:6:"Operon";i:15;s:7:"1174182";i:16;s:123:"PSEEN1378;PSEEN1379;PSEEN1380;PSEEN1381(cobD);PSEEN1382;PSEEN1383;PSEEN1384(cobU);PSEEN1385(cobT);PSEEN1386;PSEEN1387(cobS)";i:17;s:108:"cobalamin biosynthetic process [GO:0009236]; porphyrin-containing compound biosynthetic process [GO:0006779]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_008027.1";i:2;s:28:"Pseudomonas entomophila L48 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1485746-1485807";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"1479243-1483239";i:10;s:1:"+";i:11;s:4:"narB";i:12;s:31:"Assimilatory nitrate reductase ";i:13;s:9:"PSEEN1417";i:14;s:11:"Single gene";i:15;s:7:"1809894";i:16;s:15:"PSEEN1417(narB)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_008027.1";i:2;s:28:"Pseudomonas entomophila L48 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1636360-1636432";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"1637133-1637355";i:10;s:1:"+";i:11;s:9:"PSEEN1568";i:12;s:0:"";i:13;s:9:"PSEEN1568";i:14;s:11:"Single gene";i:15;s:7:"1809973";i:16;s:9:"PSEEN1568";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_008027.1";i:2;s:28:"Pseudomonas entomophila L48 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2096492-2096697";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2094256-2096383";i:10;s:1:"-";i:11;s:9:"PSEEN2012";i:12;s:51:"Putative outer membrane ferric siderophore receptor";i:13;s:9:"PSEEN2012";i:14;s:11:"Single gene";i:15;s:7:"1810164";i:16;s:9:"PSEEN2012";i:17;s:34:"siderophore transport [GO:0015891]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_008027.1";i:2;s:28:"Pseudomonas entomophila L48 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2523859-2524084";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2523566-2523752";i:10;s:1:"-";i:11;s:9:"PSEEN2431";i:12;s:0:"";i:13;s:9:"PSEEN2431";i:14;s:6:"Operon";i:15;s:7:"1174366";i:16;s:55:"PSEEN2426;PSEEN2427(cobM);PSEEN2428;PSEEN2429;PSEEN2431";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_008027.1";i:2;s:28:"Pseudomonas entomophila L48 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2524145-2524344";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2524444-2525512";i:10;s:1:"+";i:11;s:4:"cobW";i:12;s:35:"Cobalamin biosynthesis protein CobW";i:13;s:9:"PSEEN2432";i:14;s:6:"Operon";i:15;s:7:"1174367";i:16;s:41:"PSEEN2432(cobW);PSEEN2433(cobN);PSEEN2434";i:17;s:43:"cobalamin biosynthetic process [GO:0009236]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_008027.1";i:2;s:28:"Pseudomonas entomophila L48 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2693844-2694049";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2694141-2694879";i:10;s:1:"+";i:11;s:9:"PSEEN2578";i:12;s:0:"";i:13;s:9:"PSEEN2578";i:14;s:11:"Single gene";i:15;s:7:"1810402";i:16;s:9:"PSEEN2578";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_008027.1";i:2;s:28:"Pseudomonas entomophila L48 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3280185-3280391";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3280499-3281276";i:10;s:1:"+";i:11;s:9:"PSEEN3066";i:12;s:56:"Putative Fe uptake ABC transporter; ATP-binding protein ";i:13;s:9:"PSEEN3066";i:14;s:6:"Operon";i:15;s:7:"1174477";i:16;s:29:"PSEEN3066;PSEEN3067;PSEEN3068";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_008027.1";i:2;s:28:"Pseudomonas entomophila L48 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3719836-3719897";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"3719385-3719763";i:10;s:1:"-";i:11;s:4:"crcB";i:12;s:38:"Putative fluoride ion transporter CrcB";i:13;s:9:"PSEEN3444";i:14;s:11:"Single gene";i:15;s:7:"1810764";i:16;s:15:"PSEEN3444(crcB)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_008027.1";i:2;s:28:"Pseudomonas entomophila L48 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3779240-3779286";i:6;s:1:"-";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"3778384-3778741";i:10;s:1:"+";i:11;s:8:"YPN_3314";i:12;s:0:"";i:13;s:8:"YPN_3314";i:14;s:6:"Operon";i:15;s:6:"201894";i:16;s:35:"YPN_3311;YPN_3312;YPN_3313;YPN_3314";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_008027.1";i:2;s:28:"Pseudomonas entomophila L48 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3821246-3821303";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"3816572-3816977";i:10;s:1:"-";i:11;s:9:"PSEEN3543";i:12;s:44:"Putative RNA polymerase-binding protein DksA";i:13;s:9:"PSEEN3543";i:14;s:11:"Single gene";i:15;s:7:"1810798";i:16;s:9:"PSEEN3543";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_008027.1";i:2;s:28:"Pseudomonas entomophila L48 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"5282420-5282526";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"5280380-5282261";i:10;s:1:"-";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:9:"PSEEN4977";i:14;s:11:"Single gene";i:15;s:7:"1811319";i:16;s:15:"PSEEN4977(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_008027.1";i:2;s:28:"Pseudomonas entomophila L48 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"5348242-5348337";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"5348358-5349768";i:10;s:1:"+";i:11;s:4:"sahH";i:12;s:73:"Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)";i:13;s:9:"PSEEN5037";i:14;s:11:"Single gene";i:15;s:7:"1811346";i:16;s:15:"PSEEN5037(sahH)";i:17;s:96:"one-carbon metabolic process [GO:0006730]; S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}}