RiboswitchDB

Genome: Streptococcus pyogenes MGAS2096 (NC_008023.1); Phylum: Firmicutes

S.No.

Riboswitch Location and Strand

Riboswitch class

Downstream gene location and Strand

Downstream gene name/gene product description

Locus_tag of downstream gene

Single gene/within operon (According to DOOR database)

Operon details (List of genes within operon and their Locus_tag)

Predicted Structure

1

324694-324818 (+)

FMN

324896-325460 (+)

MGAS2096_Spy0330

MGAS2096_Spy0330

Operon

DOOR ID: 193112

MGAS2096_Spy0330,
MGAS2096_Spy0331

2

484745-484841 (-)

TPP

484136-484745 (-)

MGAS2096_Spy0510

MGAS2096_Spy0510

Single gene

DOOR ID: 1807474

MGAS2096_Spy0510

3

610426-610541 (+)

preQ1-II

611232-613191 (+)

ligA

DNA ligase (Polydeoxyribonucleotide synthase [NAD(+)])

MGAS2096_Spy0635

Operon

DOOR ID: 193171

MGAS2096_Spy0635 (ligA),
MGAS2096_Spy0636

4

893831-893926 (+)

purine

894012-894594 (+)

xpt

Xanthine phosphoribosyltransferase (XPRTase) (2)

MGAS2096_Spy0932

Operon

DOOR ID: 193241

MGAS2096_Spy0932 (xpt),
MGAS2096_Spy0933

5

997386-997472 (+)

glycine

997599-998922 (+)

MGAS2096_Spy1037

MGAS2096_Spy1037

Single gene

DOOR ID: 1807623

MGAS2096_Spy1037

a:6:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_008023.1";i:2;s:32:"Streptococcus pyogenes MGAS2096 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"324694-324818";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"324896-325460";i:10;s:1:"+";i:11;s:16:"MGAS2096_Spy0330";i:12;s:0:"";i:13;s:16:"MGAS2096_Spy0330";i:14;s:6:"Operon";i:15;s:6:"193112";i:16;s:33:"MGAS2096_Spy0330;MGAS2096_Spy0331";i:17;s:0:"";i:18;s:15:"View Structure
";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_008023.1";i:2;s:32:"Streptococcus pyogenes MGAS2096 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"484745-484841";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"484136-484745";i:10;s:1:"-";i:11;s:16:"MGAS2096_Spy0510";i:12;s:0:"";i:13;s:16:"MGAS2096_Spy0510";i:14;s:11:"Single gene";i:15;s:7:"1807474";i:16;s:16:"MGAS2096_Spy0510";i:17;s:0:"";i:18;s:15:"View Structure
";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_008023.1";i:2;s:32:"Streptococcus pyogenes MGAS2096 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"610426-610541";i:6;s:1:"+";i:7;s:8:"preQ1-II";i:8;s:0:"";i:9;s:13:"611232-613191";i:10;s:1:"+";i:11;s:4:"ligA";i:12;s:55:"DNA ligase  (Polydeoxyribonucleotide synthase [NAD(+)])";i:13;s:16:"MGAS2096_Spy0635";i:14;s:6:"Operon";i:15;s:6:"193171";i:16;s:39:"MGAS2096_Spy0635(ligA);MGAS2096_Spy0636";i:17;s:53:"DNA repair [GO:0006281]; DNA replication [GO:0006260]";i:18;s:15:"View Structure
";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_008023.1";i:2;s:32:"Streptococcus pyogenes MGAS2096 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"893831-893926";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:13:"894012-894594";i:10;s:1:"+";i:11;s:3:"xpt";i:12;s:48:"Xanthine phosphoribosyltransferase (XPRTase) (2)";i:13;s:16:"MGAS2096_Spy0932";i:14;s:6:"Operon";i:15;s:6:"193241";i:16;s:38:"MGAS2096_Spy0932(xpt);MGAS2096_Spy0933";i:17;s:109:"purine ribonucleoside salvage [GO:0006166]; xanthine metabolic process [GO:0046110]; XMP salvage [GO:0032265]";i:18;s:15:"View Structure
";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_008023.1";i:2;s:32:"Streptococcus pyogenes MGAS2096 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"997386-997472";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:13:"997599-998922";i:10;s:1:"+";i:11;s:16:"MGAS2096_Spy1037";i:12;s:0:"";i:13;s:16:"MGAS2096_Spy1037";i:14;s:11:"Single gene";i:15;s:7:"1807623";i:16;s:16:"MGAS2096_Spy1037";i:17;s:0:"";i:18;s:15:"View Structure
";}}