About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
169782-169883
(+)
TPP
170010-171888 (+)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Rmet_0162
Single gene
DOOR ID:
1801046
Rmet_0162
(thiC)
View Structure
2
177418-177491
(+)
SAH
177629-179048 (+)
ahcY
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
Rmet_0170
Single gene
DOOR ID:
1801048
Rmet_0170
(ahcY)
View Structure
3
971947-972115
(-)
yybP-ykoY
969913-971122 (+)
Rmet_0886
Putative membrane protein
Rmet_0886
Operon
DOOR ID:
189639
Rmet_0885,
Rmet_0886
View Structure
4
2912877-2912979
(+)
ZMP-ZTP
2914554-2915022 (+)
nrdR
Transcriptional repressor NrdR
Rmet_2681
Single gene
DOOR ID:
1801859
Rmet_2681
(nrdR)
View Structure
5
3037311-3037573
(-)
cobalamin
3034191-3035199 (-)
btuC
Vitamin B12 transporter subunit: membrane component of ABC superfamily(BtuC)
Rmet_2788
Operon
DOOR ID:
190047
Rmet_2783,
Rmet_2784
(cobS)
,
Rmet_2785
(cobT)
,
Rmet_2786
(btuR)
,
Rmet_2787
(btuD)
,
Rmet_2788
(btuC)
,
Rmet_2789
(btuB)
View Structure
6
3761298-3761385
(+)
glycine
3761633-3762761 (+)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
Rmet_3480
Operon
DOOR ID:
190207
Rmet_3480
(gcvT)
,
Rmet_3481
(gcvH)
,
Rmet_3482
(gcvP)
,
Rmet_3483
(sdaA)
,
Rmet_3484
View Structure
7
3761407-3761526
(+)
glycine
3761633-3762761 (+)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
Rmet_3480
Operon
DOOR ID:
190207
Rmet_3480
(gcvT)
,
Rmet_3481
(gcvH)
,
Rmet_3482
(gcvP)
,
Rmet_3483
(sdaA)
,
Rmet_3484
View Structure
Genome:
Cupriavidus metallidurans CH34
(
NC_007973.1
);
Phylum:
Betaproteobacteria
a:8:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_007973.1";i:2;s:31:"Cupriavidus metallidurans CH34 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"169782-169883";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"170010-171888";i:10;s:1:"+";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:9:"Rmet_0162";i:14;s:11:"Single gene";i:15;s:7:"1801046";i:16;s:15:"Rmet_0162(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_007973.1";i:2;s:31:"Cupriavidus metallidurans CH34 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"177418-177491";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:13:"177629-179048";i:10;s:1:"+";i:11;s:4:"ahcY";i:12;s:73:"Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)";i:13;s:9:"Rmet_0170";i:14;s:11:"Single gene";i:15;s:7:"1801048";i:16;s:15:"Rmet_0170(ahcY)";i:17;s:96:"one-carbon metabolic process [GO:0006730]; S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_007973.1";i:2;s:31:"Cupriavidus metallidurans CH34 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"971947-972115";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:13:"969913-971122";i:10;s:1:"+";i:11;s:9:"Rmet_0886";i:12;s:25:"Putative membrane protein";i:13;s:9:"Rmet_0886";i:14;s:6:"Operon";i:15;s:6:"189639";i:16;s:19:"Rmet_0885;Rmet_0886";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_007973.1";i:2;s:31:"Cupriavidus metallidurans CH34 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2912877-2912979";i:6;s:1:"+";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:15:"2914554-2915022";i:10;s:1:"+";i:11;s:4:"nrdR";i:12;s:30:"Transcriptional repressor NrdR";i:13;s:9:"Rmet_2681";i:14;s:11:"Single gene";i:15;s:7:"1801859";i:16;s:15:"Rmet_2681(nrdR)";i:17;s:107:"negative regulation of transcription; DNA-templated [GO:0045892]; transcription; DNA-templated [GO:0006351]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_007973.1";i:2;s:31:"Cupriavidus metallidurans CH34 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3037311-3037573";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3034191-3035199";i:10;s:1:"-";i:11;s:4:"btuC";i:12;s:76:"Vitamin B12 transporter subunit: membrane component of ABC superfamily(BtuC)";i:13;s:9:"Rmet_2788";i:14;s:6:"Operon";i:15;s:6:"190047";i:16;s:105:"Rmet_2783;Rmet_2784(cobS);Rmet_2785(cobT);Rmet_2786(btuR);Rmet_2787(btuD);Rmet_2788(btuC);Rmet_2789(btuB)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_007973.1";i:2;s:31:"Cupriavidus metallidurans CH34 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3761298-3761385";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"3761633-3762761";i:10;s:1:"+";i:11;s:4:"gcvT";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:9:"Rmet_3480";i:14;s:6:"Operon";i:15;s:6:"190207";i:16;s:73:"Rmet_3480(gcvT);Rmet_3481(gcvH);Rmet_3482(gcvP);Rmet_3483(sdaA);Rmet_3484";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_007973.1";i:2;s:31:"Cupriavidus metallidurans CH34 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3761407-3761526";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"3761633-3762761";i:10;s:1:"+";i:11;s:4:"gcvT";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:9:"Rmet_3480";i:14;s:6:"Operon";i:15;s:6:"190207";i:16;s:73:"Rmet_3480(gcvT);Rmet_3481(gcvH);Rmet_3482(gcvP);Rmet_3483(sdaA);Rmet_3484";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}}
