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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
237676-237736
(-)
fluoride
237034-237439 (-)
Nham_0217
Putative fluoride ion transporter CrcB 1
Nham_0217
Single gene
DOOR ID:
1797265
Nham_0217
View Structure
2
239336-239415
(+)
sam-alpha
240782-241766 (-)
Nham_0220
Lipolytic enzyme; G-D-S-L
Nham_0220
Operon
DOOR ID:
188378
Nham_0220,
Nham_0221,
Nham_0222
View Structure
3
745224-745303
(+)
sam-alpha
745393-746593 (+)
metX
Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)
Nham_0676
Single gene
DOOR ID:
1797488
Nham_0676
(metX)
View Structure
4
2878648-2878845
(+)
cobalamin
2878953-2881041 (+)
Nham_2621
TonB-dependent receptor; plug
Nham_2621
Single gene
DOOR ID:
1798414
Nham_2621
View Structure
5
3185661-3185796
(+)
TPP
3186804-3187002 (+)
Nham_2892
Sulfur carrier protein ThiS
Nham_2892
Operon
DOOR ID:
188816
Nham_2891,
Nham_2892,
Nham_2893
(thiG)
,
Nham_2894,
Nham_2895,
Nham_2896
View Structure
6
4032764-4032968
(-)
cobalamin
4030319-4032656 (-)
Nham_3661
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)
Nham_3661
Single gene
DOOR ID:
1798953
Nham_3661
View Structure
7
4033871-4034093
(+)
cobalamin
4034207-4037108 (+)
Nham_3663
Ribonucleoside-diphosphate reductase
Nham_3663
Operon
DOOR ID:
188943
Nham_3663,
Nham_3664
View Structure
8
4110750-4110955
(-)
cobalamin
4109612-4110638 (-)
Nham_3730
Transport system permease protein
Nham_3730
Operon
DOOR ID:
188956
Nham_3728,
Nham_3729,
Nham_3730
View Structure
Genome:
Nitrobacter hamburgensis X14
(
NC_007964.1
);
Phylum:
Alphaproteobacteria
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