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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
714109-714317
(+)
cobalamin
714390-715464 (+)
RPD_0629
Nickel/cobalt efflux system
RPD_0629
Operon
DOOR ID:
186832
RPD_0629,
RPD_0630,
RPD_0631,
RPD_0632,
RPD_0633
View Structure
2
727425-727646
(-)
cobalamin
726317-726851 (-)
RPD_0638
Bifunctional adenosylcobalamin biosynthesis protein (2)
RPD_0638
Operon
DOOR ID:
186834
RPD_0637,
RPD_0638,
RPD_0639
View Structure
3
785607-785805
(+)
cobalamin
785852-788183 (+)
RPD_0700
TonB-dependent siderophore receptor
RPD_0700
Operon
DOOR ID:
186847
RPD_0700,
RPD_0701
View Structure
4
1017504-1017583
(-)
sam-alpha
1016202-1017429 (-)
RPD_0903
O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase)
RPD_0903
Single gene
DOOR ID:
1794078
RPD_0903
View Structure
5
1469791-1469842
(-)
mini-ykkC
1469448-1469766 (-)
sugE
PSEEN1409
Single gene
DOOR ID:
1809890
PSEEN1409
(sugE)
View Structure
6
1851667-1851711
(-)
mini-ykkC
1851323-1851644 (-)
Bcen_1670
Bcen_1670
Single gene
DOOR ID:
1815585
Bcen_1670
View Structure
7
2437685-2437791
(+)
ykkC-yxkD
2437865-2438936 (+)
RPD_2183
Putative taurine transport system protein
RPD_2183
Operon
DOOR ID:
187120
RPD_2183,
RPD_2184,
RPD_2185,
RPD_2186,
RPD_2187,
RPD_2188
View Structure
8
2565609-2565817
(-)
cobalamin
2564405-2565329 (-)
RPD_2299
RPD_2299
Single gene
DOOR ID:
1794732
RPD_2299
View Structure
9
2591019-2591234
(-)
cobalamin
2590321-2590909 (-)
RPD_2321
RPD_2321
Operon
DOOR ID:
187143
RPD_2318,
RPD_2319,
RPD_2320
(cobH)
,
RPD_2321
View Structure
10
2593935-2594143
(+)
cobalamin
2594292-2595405 (+)
RPD_2324
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (NN:DBI PRT) (1) (N(1)-alpha-phosphoribosyltransferase)
RPD_2324
Operon
DOOR ID:
187145
RPD_2324,
RPD_2325,
RPD_2326
View Structure
11
3255793-3256000
(-)
cobalamin
3254891-3255593 (-)
RPD_2919
RPD_2919
Operon
DOOR ID:
187251
RPD_2918,
RPD_2919
View Structure
12
3256310-3256518
(+)
cobalamin
3256771-3257134 (+)
RPD_2921
RPD_2921
Single gene
DOOR ID:
1795013
RPD_2921
View Structure
13
3259915-3260113
(-)
cobalamin
3258831-3259842 (-)
RPD_2924
Transport system permease protein
RPD_2924
Operon
DOOR ID:
187252
RPD_2922,
RPD_2923,
RPD_2924
View Structure
14
3812110-3812251
(+)
TPP
3813344-3813536 (+)
RPD_3429
Thiamine biosynthesis protein ThiS
RPD_3429
Operon
DOOR ID:
187348
RPD_3428,
RPD_3429
View Structure
15
4563880-4563959
(-)
sam-alpha
4562580-4563780 (-)
metX
Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)
RPD_4099
Operon
DOOR ID:
187470
RPD_4098,
RPD_4099
(metX)
View Structure
16
4855579-4855783
(+)
cobalamin
4855892-4858007 (+)
RPD_4390
TonB-dependent receptor
RPD_4390
Single gene
DOOR ID:
1795707
RPD_4390
View Structure
Genome:
Rhodopseudomonas palustris BisB5
(
NC_007958.1
);
Phylum:
Alphaproteobacteria
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homocysteine biosynthetic process [GO:0071268]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_007958.1";i:2;s:33:"Rhodopseudomonas palustris BisB5 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1469791-1469842";i:6;s:1:"-";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"1469448-1469766";i:10;s:1:"-";i:11;s:4:"sugE";i:12;s:0:"";i:13;s:9:"PSEEN1409";i:14;s:11:"Single gene";i:15;s:7:"1809890";i:16;s:15:"PSEEN1409(sugE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_007958.1";i:2;s:33:"Rhodopseudomonas palustris BisB5 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1851667-1851711";i:6;s:1:"-";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"1851323-1851644";i:10;s:1:"-";i:11;s:9:"Bcen_1670";i:12;s:0:"";i:13;s:9:"Bcen_1670";i:14;s:11:"Single gene";i:15;s:7:"1815585";i:16;s:9:"Bcen_1670";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_007958.1";i:2;s:33:"Rhodopseudomonas palustris BisB5 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2437685-2437791";i:6;s:1:"+";i:7;s:9:"ykkC-yxkD";i:8;s:0:"";i:9;s:15:"2437865-2438936";i:10;s:1:"+";i:11;s:8:"RPD_2183";i:12;s:41:"Putative taurine transport system protein";i:13;s:8:"RPD_2183";i:14;s:6:"Operon";i:15;s:6:"187120";i:16;s:53:"RPD_2183;RPD_2184;RPD_2185;RPD_2186;RPD_2187;RPD_2188";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_007958.1";i:2;s:33:"Rhodopseudomonas palustris BisB5 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2565609-2565817";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2564405-2565329";i:10;s:1:"-";i:11;s:8:"RPD_2299";i:12;s:0:"";i:13;s:8:"RPD_2299";i:14;s:11:"Single gene";i:15;s:7:"1794732";i:16;s:8:"RPD_2299";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_007958.1";i:2;s:33:"Rhodopseudomonas palustris BisB5 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2591019-2591234";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2590321-2590909";i:10;s:1:"-";i:11;s:8:"RPD_2321";i:12;s:0:"";i:13;s:8:"RPD_2321";i:14;s:6:"Operon";i:15;s:6:"187143";i:16;s:41:"RPD_2318;RPD_2319;RPD_2320(cobH);RPD_2321";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_007958.1";i:2;s:33:"Rhodopseudomonas palustris BisB5 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2593935-2594143";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2594292-2595405";i:10;s:1:"+";i:11;s:8:"RPD_2324";i:12;s:126:"Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (NN:DBI PRT) (1) (N(1)-alpha-phosphoribosyltransferase)";i:13;s:8:"RPD_2324";i:14;s:6:"Operon";i:15;s:6:"187145";i:16;s:26:"RPD_2324;RPD_2325;RPD_2326";i:17;s:89:"cobalamin biosynthetic process [GO:0009236]; nucleoside biosynthetic process [GO:0009163]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_007958.1";i:2;s:33:"Rhodopseudomonas palustris BisB5 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"3255793-3256000";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3254891-3255593";i:10;s:1:"-";i:11;s:8:"RPD_2919";i:12;s:0:"";i:13;s:8:"RPD_2919";i:14;s:6:"Operon";i:15;s:6:"187251";i:16;s:17:"RPD_2918;RPD_2919";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_007958.1";i:2;s:33:"Rhodopseudomonas palustris BisB5 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"3256310-3256518";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3256771-3257134";i:10;s:1:"+";i:11;s:8:"RPD_2921";i:12;s:0:"";i:13;s:8:"RPD_2921";i:14;s:11:"Single gene";i:15;s:7:"1795013";i:16;s:8:"RPD_2921";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_007958.1";i:2;s:33:"Rhodopseudomonas palustris BisB5 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"3259915-3260113";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3258831-3259842";i:10;s:1:"-";i:11;s:8:"RPD_2924";i:12;s:33:"Transport system permease protein";i:13;s:8:"RPD_2924";i:14;s:6:"Operon";i:15;s:6:"187252";i:16;s:26:"RPD_2922;RPD_2923;RPD_2924";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_007958.1";i:2;s:33:"Rhodopseudomonas palustris BisB5 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"3812110-3812251";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3813344-3813536";i:10;s:1:"+";i:11;s:8:"RPD_3429";i:12;s:34:"Thiamine biosynthesis protein ThiS";i:13;s:8:"RPD_3429";i:14;s:6:"Operon";i:15;s:6:"187348";i:16;s:17:"RPD_3428;RPD_3429";i:17;s:0:"";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_007958.1";i:2;s:33:"Rhodopseudomonas palustris BisB5 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"4563880-4563959";i:6;s:1:"-";i:7;s:9:"sam-alpha";i:8;s:0:"";i:9;s:15:"4562580-4563780";i:10;s:1:"-";i:11;s:4:"metX";i:12;s:74:"Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)";i:13;s:8:"RPD_4099";i:14;s:6:"Operon";i:15;s:6:"187470";i:16;s:23:"RPD_4098;RPD_4099(metX)";i:17;s:44:"methionine biosynthetic process [GO:0009086]";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_007958.1";i:2;s:33:"Rhodopseudomonas palustris BisB5 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"4855579-4855783";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4855892-4858007";i:10;s:1:"+";i:11;s:8:"RPD_4390";i:12;s:23:"TonB-dependent receptor";i:13;s:8:"RPD_4390";i:14;s:11:"Single gene";i:15;s:7:"1795707";i:16;s:8:"RPD_4390";i:17;s:0:"";i:18;s:15:"View Structure ";}}
