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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
489362-489426
(+)
cobalamin
489496-489730 (+)
Bxe_B2601
Bxe_B2601
Operon
DOOR ID:
184905
Bxe_B2601,
Bxe_B2600
View Structure
2
1547121-1547373
(-)
cobalamin
1546114-1546909 (-)
Bxe_B1649
Uroporphyrinogen-III C-methyltransferase (07)
Bxe_B1649
Single gene
DOOR ID:
1789618
Bxe_B1649
View Structure
3
1547441-1547722
(+)
cobalamin
1547903-1549007 (+)
Bxe_B1647
Putative cobalamin biosynthesis-related protein
Bxe_B1647
Operon
DOOR ID:
185063
Bxe_B1647,
Bxe_B1646
(cobN)
,
Bxe_B1645
View Structure
4
1848294-1848426
(-)
ykkC-yxkD
1847480-1848236 (-)
Bxe_B1382
Bxe_B1382
Operon
DOOR ID:
185119
Bxe_B1387,
Bxe_B1386,
Bxe_B1385,
Bxe_B1384,
Bxe_B1383,
Bxe_B1382
View Structure
5
1851462-1851609
(+)
ykkC-yxkD
1851917-1852907 (+)
Bxe_B1377
ABC nitrate/sulfonate/bicarbonate family transporter; periplasmic ligand binding protein
Bxe_B1377
Single gene
DOOR ID:
1789699
Bxe_B1377
View Structure
6
1879026-1879119
(+)
glycine
1879302-1880514 (+)
Bxe_B1348
D-amino acid dehydrogenase small subunit
Bxe_B1348
Operon
DOOR ID:
185126
Bxe_B1349,
Bxe_B1348
View Structure
7
1989295-1989475
(+)
cobalamin
1989500-1991033 (+)
Bxe_B1245
Putative oxidoreductase (3)
Bxe_B1245
Operon
DOOR ID:
185142
Bxe_B1245,
Bxe_B1244
(cobH)
,
Bxe_B1243
View Structure
Genome:
Burkholderia xenovorans LB400 chromosome II
(
NC_007952.1
);
Phylum:
Betaproteobacteria
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