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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
613445-613553
(+)
ZMP-ZTP
613719-614967 (+)
glyA
Serine hydroxymethyltransferase (SHMT) (Serine methylase)
Bxe_A3914
Operon
DOOR ID:
184072
Bxe_A3914
(glyA)
,
Bxe_A3913
(nrdR)
View Structure
2
1058740-1058996
(+)
cobalamin
1059086-1060958 (+)
Bxe_A3502
Putative outer membrane cobalamin receptor; TonB dependent
Bxe_A3502
Single gene
DOOR ID:
1787449
Bxe_A3502
View Structure
3
1757341-1757402
(-)
fluoride
1756885-1757338 (-)
Bxe_A2870
Putative fluoride ion transporter CrcB
Bxe_A2870
Single gene
DOOR ID:
1787722
Bxe_A2870
View Structure
4
2608481-2608526
(-)
mini-ykkC
2608100-2608415 (-)
RPD_2336
RPD_2336
Single gene
DOOR ID:
1794742
RPD_2336
View Structure
5
3313991-3314109
(+)
TPP
3314202-3316134 (+)
Bxe_A1449
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Bxe_A1449
Single gene
DOOR ID:
1788340
Bxe_A1449
View Structure
6
3867662-3867881
(+)
yybP-ykoY
3867890-3868463 (+)
Bxe_A0925
Putative membrane protein
Bxe_A0925
Single gene
DOOR ID:
1788555
Bxe_A0925
View Structure
7
4181276-4181554
(-)
FMN
4180408-4181143 (-)
Bxe_A0635
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
Bxe_A0635
Single gene
DOOR ID:
1788708
Bxe_A0635
View Structure
8
4452142-4452265
(-)
TPP
4450793-4451924 (-)
Bxe_A0383
Glycine oxidase (9)
Bxe_A0383
Operon
DOOR ID:
184747
Bxe_A0386,
Bxe_A0385
(thiG)
,
Bxe_A0384,
Bxe_A0383
View Structure
9
4657422-4657558
(-)
SAH
4655966-4657388 (-)
Bxe_A0178
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
Bxe_A0178
Single gene
DOOR ID:
1788878
Bxe_A0178
View Structure
10
4747878-4748050
(-)
yybP-ykoY
4746766-4747777 (-)
Bxe_A0089
Sodium/calcium antiporter
Bxe_A0089
Single gene
DOOR ID:
1788908
Bxe_A0089
View Structure
11
4779840-4779941
(+)
glycine
4780170-4781325 (+)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
Bxe_A0056
Operon
DOOR ID:
184818
Bxe_A0056
(gcvT)
,
Bxe_A0055,
Bxe_A0054
View Structure
12
4779975-4780126
(+)
glycine
4780170-4781325 (+)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
Bxe_A0056
Operon
DOOR ID:
184818
Bxe_A0056
(gcvT)
,
Bxe_A0055,
Bxe_A0054
View Structure
Genome:
Burkholderia xenovorans LB400 chromosome I
(
NC_007951.1
);
Phylum:
Betaproteobacteria
a:13:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_007951.1";i:2;s:42:"Burkholderia xenovorans LB400 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"613445-613553";i:6;s:1:"+";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:13:"613719-614967";i:10;s:1:"+";i:11;s:4:"glyA";i:12;s:58:"Serine hydroxymethyltransferase (SHMT) (Serine methylase) ";i:13;s:9:"Bxe_A3914";i:14;s:6:"Operon";i:15;s:6:"184072";i:16;s:31:"Bxe_A3914(glyA);Bxe_A3913(nrdR)";i:17;s:100:"glycine biosynthetic process from serine [GO:0019264]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_007951.1";i:2;s:42:"Burkholderia xenovorans LB400 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1058740-1058996";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1059086-1060958";i:10;s:1:"+";i:11;s:9:"Bxe_A3502";i:12;s:58:"Putative outer membrane cobalamin receptor; TonB dependent";i:13;s:9:"Bxe_A3502";i:14;s:11:"Single gene";i:15;s:7:"1787449";i:16;s:9:"Bxe_A3502";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_007951.1";i:2;s:42:"Burkholderia xenovorans LB400 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1757341-1757402";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"1756885-1757338";i:10;s:1:"-";i:11;s:9:"Bxe_A2870";i:12;s:38:"Putative fluoride ion transporter CrcB";i:13;s:9:"Bxe_A2870";i:14;s:11:"Single gene";i:15;s:7:"1787722";i:16;s:9:"Bxe_A2870";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_007951.1";i:2;s:42:"Burkholderia xenovorans LB400 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2608481-2608526";i:6;s:1:"-";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"2608100-2608415";i:10;s:1:"-";i:11;s:8:"RPD_2336";i:12;s:0:"";i:13;s:8:"RPD_2336";i:14;s:11:"Single gene";i:15;s:7:"1794742";i:16;s:8:"RPD_2336";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_007951.1";i:2;s:42:"Burkholderia xenovorans LB400 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3313991-3314109";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3314202-3316134";i:10;s:1:"+";i:11;s:9:"Bxe_A1449";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:9:"Bxe_A1449";i:14;s:11:"Single gene";i:15;s:7:"1788340";i:16;s:9:"Bxe_A1449";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_007951.1";i:2;s:42:"Burkholderia xenovorans LB400 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3867662-3867881";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"3867890-3868463";i:10;s:1:"+";i:11;s:9:"Bxe_A0925";i:12;s:25:"Putative membrane protein";i:13;s:9:"Bxe_A0925";i:14;s:11:"Single gene";i:15;s:7:"1788555";i:16;s:9:"Bxe_A0925";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_007951.1";i:2;s:42:"Burkholderia xenovorans LB400 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"4181276-4181554";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"4180408-4181143";i:10;s:1:"-";i:11;s:9:"Bxe_A0635";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:9:"Bxe_A0635";i:14;s:11:"Single gene";i:15;s:7:"1788708";i:16;s:9:"Bxe_A0635";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_007951.1";i:2;s:42:"Burkholderia xenovorans LB400 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"4452142-4452265";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4450793-4451924";i:10;s:1:"-";i:11;s:9:"Bxe_A0383";i:12;s:19:"Glycine oxidase (9)";i:13;s:9:"Bxe_A0383";i:14;s:6:"Operon";i:15;s:6:"184747";i:16;s:45:"Bxe_A0386;Bxe_A0385(thiG);Bxe_A0384;Bxe_A0383";i:17;s:43:"D-amino acid metabolic process [GO:0046416]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_007951.1";i:2;s:42:"Burkholderia xenovorans LB400 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"4657422-4657558";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"4655966-4657388";i:10;s:1:"-";i:11;s:9:"Bxe_A0178";i:12;s:73:"Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)";i:13;s:9:"Bxe_A0178";i:14;s:11:"Single gene";i:15;s:7:"1788878";i:16;s:9:"Bxe_A0178";i:17;s:96:"one-carbon metabolic process [GO:0006730]; S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_007951.1";i:2;s:42:"Burkholderia xenovorans LB400 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"4747878-4748050";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"4746766-4747777";i:10;s:1:"-";i:11;s:9:"Bxe_A0089";i:12;s:25:"Sodium/calcium antiporter";i:13;s:9:"Bxe_A0089";i:14;s:11:"Single gene";i:15;s:7:"1788908";i:16;s:9:"Bxe_A0089";i:17;s:36:"transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_007951.1";i:2;s:42:"Burkholderia xenovorans LB400 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"4779840-4779941";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"4780170-4781325";i:10;s:1:"+";i:11;s:4:"gcvT";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:9:"Bxe_A0056";i:14;s:6:"Operon";i:15;s:6:"184818";i:16;s:35:"Bxe_A0056(gcvT);Bxe_A0055;Bxe_A0054";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_007951.1";i:2;s:42:"Burkholderia xenovorans LB400 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"4779975-4780126";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"4780170-4781325";i:10;s:1:"+";i:11;s:4:"gcvT";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:9:"Bxe_A0056";i:14;s:6:"Operon";i:15;s:6:"184818";i:16;s:35:"Bxe_A0056(gcvT);Bxe_A0055;Bxe_A0054";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}}