About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
39480-39591
(+)
TPP
39662-41579 (+)
Bpro_0037
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Bpro_0037
Single gene
DOOR ID:
1784877
Bpro_0037
View Structure
2
188520-188613
(+)
SAH
188630-191465 (+)
Bpro_0174
Methionine synthase (3) (5-methyltetrahydrofolate--homocysteine methyltransferase)
Bpro_0174
Single gene
DOOR ID:
1784951
Bpro_0174
View Structure
3
1930584-1930685
(-)
glycine
1929371-1930568 (-)
Bpro_1868
Glycine cleavage system T protein
Bpro_1868
Operon
DOOR ID:
183197
Bpro_1866,
Bpro_1867,
Bpro_1868
View Structure
4
2929075-2929365
(-)
cobalamin
2927056-2928991 (-)
Bpro_2786
TonB-dependent receptor
Bpro_2786
Operon
DOOR ID:
183386
Bpro_2772,
Bpro_2773,
Bpro_2774,
Bpro_2775,
Bpro_2776
(cbiD)
,
Bpro_2777,
Bpro_2778,
Bpro_2779,
Bpro_2780,
Bpro_2781,
Bpro_2782,
Bpro_2783,
Bpro_2784,
Bpro_2785,
Bpro_2786
View Structure
5
3034848-3034979
(+)
ZMP-ZTP
3035026-3036271 (+)
glyA
Serine hydroxymethyltransferase (SHMT) (Serine methylase)
Bpro_2874
Operon
DOOR ID:
183403
Bpro_2874
(glyA)
,
Bpro_2875
(nrdR)
View Structure
6
4338971-4339043
(-)
SAH
4337431-4338871 (-)
Bpro_4132
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
Bpro_4132
Single gene
DOOR ID:
1786516
Bpro_4132
View Structure
7
5181232-5181434
(-)
yybP-ykoY
5179247-5180411 (-)
metX
Homoserine O-succinyltransferase (HST) (6) (Homoserine transsuccinylase) (HTS)
Bpro_4889
Operon
DOOR ID:
183829
Bpro_4888,
Bpro_4889
(metX)
View Structure
Genome:
Polaromonas sp. JS666
(
NC_007948.1
);
Phylum:
Betaproteobacteria
a:8:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_007948.1";i:2;s:22:"Polaromonas sp. JS666 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:11:"39480-39591";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:11:"39662-41579";i:10;s:1:"+";i:11;s:9:"Bpro_0037";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:9:"Bpro_0037";i:14;s:11:"Single gene";i:15;s:7:"1784877";i:16;s:9:"Bpro_0037";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_007948.1";i:2;s:22:"Polaromonas sp. JS666 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"188520-188613";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:13:"188630-191465";i:10;s:1:"+";i:11;s:9:"Bpro_0174";i:12;s:82:"Methionine synthase (3) (5-methyltetrahydrofolate--homocysteine methyltransferase)";i:13;s:9:"Bpro_0174";i:14;s:11:"Single gene";i:15;s:7:"1784951";i:16;s:9:"Bpro_0174";i:17;s:60:"pteridine-containing compound metabolic process [GO:0042558]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_007948.1";i:2;s:22:"Polaromonas sp. JS666 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1930584-1930685";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1929371-1930568";i:10;s:1:"-";i:11;s:9:"Bpro_1868";i:12;s:33:"Glycine cleavage system T protein";i:13;s:9:"Bpro_1868";i:14;s:6:"Operon";i:15;s:6:"183197";i:16;s:29:"Bpro_1866;Bpro_1867;Bpro_1868";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_007948.1";i:2;s:22:"Polaromonas sp. JS666 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2929075-2929365";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2927056-2928991";i:10;s:1:"-";i:11;s:9:"Bpro_2786";i:12;s:23:"TonB-dependent receptor";i:13;s:9:"Bpro_2786";i:14;s:6:"Operon";i:15;s:6:"183386";i:16;s:155:"Bpro_2772;Bpro_2773;Bpro_2774;Bpro_2775;Bpro_2776(cbiD);Bpro_2777;Bpro_2778;Bpro_2779;Bpro_2780;Bpro_2781;Bpro_2782;Bpro_2783;Bpro_2784;Bpro_2785;Bpro_2786";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_007948.1";i:2;s:22:"Polaromonas sp. JS666 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3034848-3034979";i:6;s:1:"+";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:15:"3035026-3036271";i:10;s:1:"+";i:11;s:4:"glyA";i:12;s:58:"Serine hydroxymethyltransferase (SHMT) (Serine methylase) ";i:13;s:9:"Bpro_2874";i:14;s:6:"Operon";i:15;s:6:"183403";i:16;s:31:"Bpro_2874(glyA);Bpro_2875(nrdR)";i:17;s:100:"glycine biosynthetic process from serine [GO:0019264]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_007948.1";i:2;s:22:"Polaromonas sp. JS666 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"4338971-4339043";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"4337431-4338871";i:10;s:1:"-";i:11;s:9:"Bpro_4132";i:12;s:73:"Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)";i:13;s:9:"Bpro_4132";i:14;s:11:"Single gene";i:15;s:7:"1786516";i:16;s:9:"Bpro_4132";i:17;s:96:"one-carbon metabolic process [GO:0006730]; S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_007948.1";i:2;s:22:"Polaromonas sp. JS666 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"5181232-5181434";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"5179247-5180411";i:10;s:1:"-";i:11;s:4:"metX";i:12;s:78:"Homoserine O-succinyltransferase (HST) (6) (Homoserine transsuccinylase) (HTS)";i:13;s:9:"Bpro_4889";i:14;s:6:"Operon";i:15;s:6:"183829";i:16;s:25:"Bpro_4888;Bpro_4889(metX)";i:17;s:44:"methionine biosynthetic process [GO:0009086]";i:18;s:15:"View Structure ";}}