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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
121288-121499
(-)
cobalamin
118969-121081 (-)
Mfla_0109
TonB-dependent siderophore receptor
Mfla_0109
Operon
DOOR ID:
182276
Mfla_0108,
Mfla_0109
View Structure
2
134479-134699
(-)
cobalamin
132490-134365 (-)
Mfla_0122
TonB-dependent receptor
Mfla_0122
Single gene
DOOR ID:
1784044
Mfla_0122
View Structure
3
205548-205628
(-)
SAH
204019-205432 (-)
Mfla_0193
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
Mfla_0193
Single gene
DOOR ID:
1784062
Mfla_0193
View Structure
4
502984-503076
(-)
c-di-GMP-I
501128-502847 (-)
Mfla_0484
Hemolysin activator HlyB
Mfla_0484
operon
DOOR ID:
182364
Mfla_0480,
Mfla_0481,
Mfla_0482,
Mfla_0483,
Mfla_0484
View Structure
5
1286474-1286697
(+)
cobalamin
1286800-1289125 (+)
Mfla_1223
Ribonucleoside-diphosphate reductase
Mfla_1223
Operon
DOOR ID:
182511
Mfla_1223,
Mfla_1224
(nrdB)
,
Mfla_1225
View Structure
6
1456188-1456294
(-)
yybP-ykoY
1455553-1456123 (-)
Mfla_1363
Putative manganese efflux pump MntP
Mfla_1363
Single gene
DOOR ID:
1784464
Mfla_1363
View Structure
7
1921493-1921603
(-)
TPP
1920662-1921448 (-)
fabG
Short-chain dehydrogenase/reductase SDR
Mfla_1785
Single gene
DOOR ID:
1784592
Mfla_1785
(fabG)
View Structure
8
1921794-1921897
(+)
TPP
1921944-1923396 (+)
Mfla_1786
Na+/solute symporter
Mfla_1786
Single gene
DOOR ID:
1784593
Mfla_1786
View Structure
9
2130253-2130351
(+)
TPP
2130424-2132584 (+)
Mfla_1993
TonB-dependent siderophore receptor
Mfla_1993
Single gene
DOOR ID:
1784635
Mfla_1993
View Structure
10
2714533-2714643
(-)
TPP
2712576-2714463 (-)
Mfla_2530
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Mfla_2530
Single gene
DOOR ID:
1784771
Mfla_2530
View Structure
Genome:
Methylobacillus flagellatus KT
(
NC_007947.1
);
Phylum:
Betaproteobacteria
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S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_007947.1";i:2;s:30:"Methylobacillus flagellatus KT";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"502984-503076";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:13:"501128-502847";i:10;s:1:"-";i:11;s:9:"Mfla_0484";i:12;s:24:"Hemolysin activator HlyB";i:13;s:9:"Mfla_0484";i:14;s:6:"operon";i:15;s:6:"182364";i:16;s:49:"Mfla_0480;Mfla_0481;Mfla_0482;Mfla_0483;Mfla_0484";i:17;s:30:"protein transport [GO:0015031]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_007947.1";i:2;s:30:"Methylobacillus flagellatus KT";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1286474-1286697";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1286800-1289125";i:10;s:1:"+";i:11;s:9:"Mfla_1223";i:12;s:37:"Ribonucleoside-diphosphate reductase ";i:13;s:9:"Mfla_1223";i:14;s:6:"Operon";i:15;s:6:"182511";i:16;s:35:"Mfla_1223;Mfla_1224(nrdB);Mfla_1225";i:17;s:28:"DNA replication [GO:0006260]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_007947.1";i:2;s:30:"Methylobacillus flagellatus KT";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1456188-1456294";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1455553-1456123";i:10;s:1:"-";i:11;s:9:"Mfla_1363";i:12;s:35:"Putative manganese efflux pump MntP";i:13;s:9:"Mfla_1363";i:14;s:11:"Single gene";i:15;s:7:"1784464";i:16;s:9:"Mfla_1363";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_007947.1";i:2;s:30:"Methylobacillus flagellatus KT";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1921493-1921603";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1920662-1921448";i:10;s:1:"-";i:11;s:4:"fabG";i:12;s:39:"Short-chain dehydrogenase/reductase SDR";i:13;s:9:"Mfla_1785";i:14;s:11:"Single gene";i:15;s:7:"1784592";i:16;s:15:"Mfla_1785(fabG)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_007947.1";i:2;s:30:"Methylobacillus flagellatus KT";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1921794-1921897";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1921944-1923396";i:10;s:1:"+";i:11;s:9:"Mfla_1786";i:12;s:20:"Na+/solute symporter";i:13;s:9:"Mfla_1786";i:14;s:11:"Single gene";i:15;s:7:"1784593";i:16;s:9:"Mfla_1786";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_007947.1";i:2;s:30:"Methylobacillus flagellatus KT";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2130253-2130351";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2130424-2132584";i:10;s:1:"+";i:11;s:9:"Mfla_1993";i:12;s:35:"TonB-dependent siderophore receptor";i:13;s:9:"Mfla_1993";i:14;s:11:"Single gene";i:15;s:7:"1784635";i:16;s:9:"Mfla_1993";i:17;s:34:"siderophore transport [GO:0015891]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_007947.1";i:2;s:30:"Methylobacillus flagellatus KT";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2714533-2714643";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2712576-2714463";i:10;s:1:"-";i:11;s:9:"Mfla_2530";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:9:"Mfla_2530";i:14;s:11:"Single gene";i:15;s:7:"1784771";i:16;s:9:"Mfla_2530";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}}
