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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
79177-79276
(-)
TPP
78162-79146 (-)
tbpA
Thiamine-binding periplasmic protein
UTI89_C0076
Operon
DOOR ID:
181248
UTI89_C0074
(thiQ)
,
UTI89_C0075
(thiP)
,
UTI89_C0076
(tbpA)
View Structure
2
779855-779999
(+)
MOCO
780997-781510 (+)
moaB
Molybdenum cofactor biosynthesis protein B
UTI89_C0781
Operon
DOOR ID:
181386
UTI89_C0780
(moaA)
,
UTI89_C0781
(moaB)
View Structure
3
1932145-1932246
(+)
yybP-ykoY
1932322-1932943 (+)
UTI89_C2019
Probable manganese efflux pump MntP
UTI89_C2019
Single gene
DOOR ID:
1783072
UTI89_C2019
View Structure
4
2326094-2326190
(-)
TPP
2325270-2326059 (-)
thiM
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
UTI89_C2378
Operon
DOOR ID:
181683
UTI89_C2375
(yegW)
,
UTI89_C2376
(yegX)
,
UTI89_C2377
(thiD)
,
UTI89_C2378
(thiM)
View Structure
5
2440543-2440591
(+)
mini-ykkC
2440615-2441458 (+)
RPD_2186
RPD_2186
Operon
DOOR ID:
187120
RPD_2183,
RPD_2184,
RPD_2185,
RPD_2186,
RPD_2187,
RPD_2188
View Structure
6
3419312-3419460
(-)
FMN
3418554-3419208 (-)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
UTI89_C3483
Single gene
DOOR ID:
1783502
UTI89_C3483
(ribB)
View Structure
7
3710042-3710142
(+)
TPP
3710210-3712118 (+)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
UTI89_C3825
Operon
DOOR ID:
181974
UTI89_C3825
(thiC)
,
UTI89_C3826
(thiE)
,
UTI89_C3827
(thiF)
,
UTI89_C3828,
UTI89_C3829
(thiG)
,
UTI89_C3830
(thiH)
View Structure
8
4453092-4453282
(+)
cobalamin
4453301-4455191 (+)
btuB
Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
UTI89_C4561
Operon
DOOR ID:
182132
UTI89_C4561
(btuB)
,
UTI89_C4562
(murI)
View Structure
9
4485871-4486067
(-)
lysine
4484429-4485779 (-)
lysC
Aspartokinase
UTI89_C4592
Single gene
DOOR ID:
1783816
UTI89_C4592
(lysC)
View Structure
10
4747262-4747377
(+)
Mg sensor
4747470-4750167 (+)
mgtA
MgtA Mg2+-importing ATPase; P-type 1
UTI89_C4847
Single gene
DOOR ID:
1783896
UTI89_C4847
(mgtA)
View Structure
Genome:
Escherichia coli UTI89
(
NC_007946.1
);
Phylum:
Gammaproteobacteria
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thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_007946.1";i:2;s:23:"Escherichia coli UTI89 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2440543-2440591";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"2440615-2441458";i:10;s:1:"+";i:11;s:8:"RPD_2186";i:12;s:0:"";i:13;s:8:"RPD_2186";i:14;s:6:"Operon";i:15;s:6:"187120";i:16;s:53:"RPD_2183;RPD_2184;RPD_2185;RPD_2186;RPD_2187;RPD_2188";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_007946.1";i:2;s:23:"Escherichia coli UTI89 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3419312-3419460";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"3418554-3419208";i:10;s:1:"-";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:11:"UTI89_C3483";i:14;s:11:"Single gene";i:15;s:7:"1783502";i:16;s:17:"UTI89_C3483(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_007946.1";i:2;s:23:"Escherichia coli UTI89 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3710042-3710142";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3710210-3712118";i:10;s:1:"+";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:11:"UTI89_C3825";i:14;s:6:"Operon";i:15;s:6:"181974";i:16;s:101:"UTI89_C3825(thiC);UTI89_C3826(thiE);UTI89_C3827(thiF);UTI89_C3828;UTI89_C3829(thiG);UTI89_C3830(thiH)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_007946.1";i:2;s:23:"Escherichia coli UTI89 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4453092-4453282";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4453301-4455191";i:10;s:1:"+";i:11;s:4:"btuB";i:12;s:89:"Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)";i:13;s:11:"UTI89_C4561";i:14;s:6:"Operon";i:15;s:6:"182132";i:16;s:35:"UTI89_C4561(btuB);UTI89_C4562(murI)";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_007946.1";i:2;s:23:"Escherichia coli UTI89 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4485871-4486067";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"4484429-4485779";i:10;s:1:"-";i:11;s:4:"lysC";i:12;s:14:"Aspartokinase ";i:13;s:11:"UTI89_C4592";i:14;s:11:"Single gene";i:15;s:7:"1783816";i:16;s:17:"UTI89_C4592(lysC)";i:17;s:105:"lysine biosynthetic process via diaminopimelate [GO:0009089]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_007946.1";i:2;s:23:"Escherichia coli UTI89 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4747262-4747377";i:6;s:1:"+";i:7;s:9:"Mg sensor";i:8;s:0:"";i:9;s:15:"4747470-4750167";i:10;s:1:"+";i:11;s:4:"mgtA";i:12;s:37:"MgtA Mg2+-importing ATPase; P-type 1 ";i:13;s:11:"UTI89_C4847";i:14;s:11:"Single gene";i:15;s:7:"1783896";i:16;s:17:"UTI89_C4847(mgtA)";i:17;s:0:"";i:18;s:15:"View Structure ";}}