About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
213932-214116
(+)
lysine
214227-215679 (+)
LSL_0188
Lysine-specific permease
LSL_0188
Single gene
DOOR ID:
1781033
LSL_0188
View Structure
2
487061-487148
(+)
SMK_box
488666-491084 (+)
leuS
Leucine--tRNA ligase (Leucyl-tRNA synthetase) (LeuRS)
LSL_0442
Single gene
DOOR ID:
1781117
LSL_0442
(leuS)
View Structure
3
967236-967362
(-)
FMN
966528-967125 (-)
LSL_0937
Riboflavin transporter
LSL_0937
Single gene
DOOR ID:
1781236
LSL_0937
View Structure
4
1357539-1357636
(-)
purine
1356892-1357471 (-)
xpt
Xanthine phosphoribosyltransferase (XPRTase) (2)
LSL_1309
Operon
DOOR ID:
180751
LSL_1308,
LSL_1309
(xpt)
View Structure
5
1530622-1530666
(-)
PreQ1
1530113-1530611 (-)
LSL_1470
LSL_1470
Operon
DOOR ID:
180779
LSL_1468
(fabG)
,
LSL_1469,
LSL_1470
View Structure
6
1599957-1600001
(+)
PreQ1
1600018-1601002 (+)
uRH
Inosine-uridine preferring nucleoside hydrolase
LSL_1528
Operon
DOOR ID:
180795
LSL_1528
(uRH)
,
LSL_1529
View Structure
7
1666551-1666652
(-)
THF
1665946-1666489 (-)
LSL_1584
Hypothetical membrane spanning protein
LSL_1584
Single gene
DOOR ID:
1781443
LSL_1584
View Structure
8
1747188-1747286
(+)
TPP
1747363-1747921 (+)
LSL_1668
Hypothetical membrane spanning protein
LSL_1668
Single gene
DOOR ID:
1781474
LSL_1668
View Structure
Genome:
Lactobacillus salivarius UCC118
(
NC_007929.1
);
Phylum:
Firmicutes
a:9:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_007929.1";i:2;s:32:"Lactobacillus salivarius UCC118 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"213932-214116";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:13:"214227-215679";i:10;s:1:"+";i:11;s:8:"LSL_0188";i:12;s:24:"Lysine-specific permease";i:13;s:8:"LSL_0188";i:14;s:11:"Single gene";i:15;s:7:"1781033";i:16;s:8:"LSL_0188";i:17;s:33:"amino acid transport [GO:0006865]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_007929.1";i:2;s:32:"Lactobacillus salivarius UCC118 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"487061-487148";i:6;s:1:"+";i:7;s:7:"SMK_box";i:8;s:0:"";i:9;s:13:"488666-491084";i:10;s:1:"+";i:11;s:4:"leuS";i:12;s:54:"Leucine--tRNA ligase (Leucyl-tRNA synthetase) (LeuRS)";i:13;s:8:"LSL_0442";i:14;s:11:"Single gene";i:15;s:7:"1781117";i:16;s:14:"LSL_0442(leuS)";i:17;s:39:"leucyl-tRNA aminoacylation [GO:0006429]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_007929.1";i:2;s:32:"Lactobacillus salivarius UCC118 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"967236-967362";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"966528-967125";i:10;s:1:"-";i:11;s:8:"LSL_0937";i:12;s:22:"Riboflavin transporter";i:13;s:8:"LSL_0937";i:14;s:11:"Single gene";i:15;s:7:"1781236";i:16;s:8:"LSL_0937";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_007929.1";i:2;s:32:"Lactobacillus salivarius UCC118 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1357539-1357636";i:6;s:1:"-";i:7;s:6:"purine";i:8;s:0:"";i:9;s:15:"1356892-1357471";i:10;s:1:"-";i:11;s:3:"xpt";i:12;s:48:"Xanthine phosphoribosyltransferase (XPRTase) (2)";i:13;s:8:"LSL_1309";i:14;s:6:"Operon";i:15;s:6:"180751";i:16;s:22:"LSL_1308;LSL_1309(xpt)";i:17;s:109:"purine ribonucleoside salvage [GO:0006166]; xanthine metabolic process [GO:0046110]; XMP salvage [GO:0032265]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_007929.1";i:2;s:32:"Lactobacillus salivarius UCC118 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1530622-1530666";i:6;s:1:"-";i:7;s:5:"PreQ1";i:8;s:0:"";i:9;s:15:"1530113-1530611";i:10;s:1:"-";i:11;s:8:"LSL_1470";i:12;s:0:"";i:13;s:8:"LSL_1470";i:14;s:6:"Operon";i:15;s:6:"180779";i:16;s:32:"LSL_1468(fabG);LSL_1469;LSL_1470";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_007929.1";i:2;s:32:"Lactobacillus salivarius UCC118 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1599957-1600001";i:6;s:1:"+";i:7;s:5:"PreQ1";i:8;s:0:"";i:9;s:15:"1600018-1601002";i:10;s:1:"+";i:11;s:3:"uRH";i:12;s:48:"Inosine-uridine preferring nucleoside hydrolase ";i:13;s:8:"LSL_1528";i:14;s:6:"Operon";i:15;s:6:"180795";i:16;s:22:"LSL_1528(uRH);LSL_1529";i:17;s:30:"metabolic process [GO:0008152]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_007929.1";i:2;s:32:"Lactobacillus salivarius UCC118 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1666551-1666652";i:6;s:1:"-";i:7;s:3:"THF";i:8;s:0:"";i:9;s:15:"1665946-1666489";i:10;s:1:"-";i:11;s:8:"LSL_1584";i:12;s:38:"Hypothetical membrane spanning protein";i:13;s:8:"LSL_1584";i:14;s:11:"Single gene";i:15;s:7:"1781443";i:16;s:8:"LSL_1584";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_007929.1";i:2;s:32:"Lactobacillus salivarius UCC118 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1747188-1747286";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1747363-1747921";i:10;s:1:"+";i:11;s:8:"LSL_1668";i:12;s:38:"Hypothetical membrane spanning protein";i:13;s:8:"LSL_1668";i:14;s:11:"Single gene";i:15;s:7:"1781474";i:16;s:8:"LSL_1668";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}}