Genome: Rhodopseudomonas palustris BisB18 (NC_007925.1); Phylum: Alphaproteobacteria
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 96430-96643 (-)cobalamin94302-96318 (-)RPC_0084

TonB-dependent receptor; plug		RPC_0084Single gene

DOOR ID: 1778824		RPC_0084 View Structure
2 1349405-1349446 (+)mini-ykkC4648987-4649521 (-)blc

Bxe_A3247Single gene

DOOR ID: 1787582		Bxe_A3247 View Structure
3 1384247-1384427 (-)cobalamin1382592-1384014 (-)RPC_1267

Radical SAM		RPC_1267Single gene

DOOR ID: 1779345		RPC_1267 View Structure
4 2063445-2063662 (-)cobalamin2062899-2063328 (-)RPC_1891

RPC_1891Operon

DOOR ID: 1173351		RPC_1886,
RPC_1887,
RPC_1888 (cobH),
RPC_1889 (cobN),
RPC_1890,
RPC_1891		 View Structure
5 2130252-2130464 (+)cobalamin2130601-2131396 (+)RPC_1958

RPC_1958Operon

DOOR ID: 1173367		RPC_1958,
RPC_1959,
RPC_1960,
RPC_1961,
RPC_1962		 View Structure
6 2359100-2359237 (-)TPP2357883-2358081 (-)RPC_2165

Thiamine biosynthesis protein ThiS		RPC_2165Operon

DOOR ID: 1173403		RPC_2163,
RPC_2164 (thiG),
RPC_2165,
RPC_2166		 View Structure
7 2716753-2716897 (-)cobalamin2716500-2716719 (-)RPC_2504

RPC_2504Operon

DOOR ID: 1173465		RPC_2502,
RPC_2503,
RPC_2504		 View Structure
8 3897187-3897402 (-)cobalamin3896576-3896873 (-)RPC_3507

RPC_3507Operon

DOOR ID: 1173649		RPC_3506,
RPC_3507		 View Structure
9 3900119-3900330 (-)cobalamin3897636-3900009 (-)RPC_3508

5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)		RPC_3508Single gene

DOOR ID: 1780353		RPC_3508 View Structure
10 3909716-3909916 (-)cobalamin3907584-3909606 (-)RPC_3517

Ribonucleoside-triphosphate reductase; anaerobic		RPC_3517Operon

DOOR ID: 1173651		RPC_3515,
RPC_3516,
RPC_3517		 View Structure
11 3914312-3914520 (-)cobalamin3911322-3914205 (-)RPC_3519

Ribonucleoside-diphosphate reductase 		RPC_3519Operon

DOOR ID: 1173652		RPC_3518,
RPC_3519		 View Structure
12 4173288-4173480 (-)cobalamin4172589-4173177 (-)RPC_3747

Bifunctional adenosylcobalamin biosynthesis protein (2)		RPC_3747Operon

DOOR ID: 1173694		RPC_3746,
RPC_3747		 View Structure
13 4648610-4648656 (+)mini-ykkC1349468-1349789 (+)Bxe_A3247

UTI89_C4749Operon

DOOR ID: 182170		UTI89_C4749 (blc),
UTI89_C4750 (ampC),
UTI89_C4751 (frdD),
UTI89_C4752 (frdC),
UTI89_C4753 (frdB),
UTI89_C4754 (frdA)		 View Structure
14 4737279-4737476 (+)cobalamin4737577-4738567 (+)RPC_4254

Transport system permease protein		RPC_4254Operon

DOOR ID: 1173790		RPC_4254,
RPC_4255,
RPC_4256		 View Structure
15 4742447-4742649 (-)cobalamin4741866-4742202 (-)RPC_4258

RPC_4258Single gene

DOOR ID: 1780669		RPC_4258 View Structure
16 4779643-4779722 (-)sam-alpha4778368-4779571 (-)metX

Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)		RPC_4281Operon

DOOR ID: 1173795		RPC_4280,
RPC_4281 (metX)		 View Structure
17 5067660-5067771 (-)ykkC-yxkD5066510-5067632 (-)RPC_4536

NLPA lipoprotein		RPC_4536Operon

DOOR ID: 1173838		RPC_4531,
RPC_4532,
RPC_4533,
RPC_4534,
RPC_4535,
RPC_4536		 View Structure
18 5473167-5473246 (+)sam-alpha5473314-5474520 (+)RPC_4904

O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase) 		RPC_4904Single gene

DOOR ID: 1780949		RPC_4904 View Structure