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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
455092-455207
(+)
TPP
455299-456148 (+)
Sde_0368
Phosphomethylpyrimidine kinase
Sde_0368
Operon
DOOR ID:
179802
Sde_0368,
Sde_0369,
Sde_0370
View Structure
2
787401-787494
(-)
c-di-GMP-I
786016-787336 (-)
Sde_0622
HD-GYP domain
Sde_0622
single gene
DOOR ID:
1777173
Sde_0622
View Structure
3
792625-792845
(+)
cobalamin
793003-794920 (+)
btuB
Vitamin B12 transporter BtuB
Sde_0628
Single gene
DOOR ID:
1777175
Sde_0628
View Structure
4
989348-989437
(-)
c-di-GMP-I
988744-989254 (-)
Sde_0765
Uncharacterized protein
Sde_0765
single gene
DOOR ID:
1777262
Sde_0765
View Structure
5
1455387-1455513
(+)
ykkC-yxkD
1455579-1456632 (+)
Sde_1122
ABC transporter; periplasmic substrate-binding protein
Sde_1122
Single gene
DOOR ID:
1777399
Sde_1122
View Structure
6
1879450-1879550
(-)
TPP
1878054-1878282 (-)
Sde_1455
Thiamine biosynthesis protein ThiS
Sde_1455
Operon
DOOR ID:
179990
Sde_1451,
Sde_1452,
Sde_1453,
Sde_1454
(thiG)
,
Sde_1455,
Sde_1456
View Structure
7
3222813-3222860
(+)
mini-ykkC
5063999-5064833 (-)
RPC_4533
RPC_2945
Single gene
DOOR ID:
1780100
RPC_2945
View Structure
8
4340477-4340583
(+)
TPP
4340659-4342804 (+)
Sde_3405
TonB-dependent receptor; plug
Sde_3405
Single gene
DOOR ID:
1778469
Sde_3405
View Structure
Genome:
Saccharophagus degradans 2-40
(
NC_007912.1
);
Phylum:
Gammaproteobacteria
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