Genome: Desulfitobacterium hafniense Y51 (NC_007907.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 15544-15633 (-)c-di-GMP-I14747-15323 (+)DSY0013

Uncharacterized protein		DSY0013single gene

DOOR ID: 1773356		DSY0013 View Structure
2 89861-90042 (+)cobalamin90211-91717 (+)DSY0087

DSY0087Single gene

DOOR ID: 1773385		DSY0087 View Structure
3 420973-421107 (+)cobalamin421246-422083 (+)DSY0362

Putative nitrogenase subunit nifH		DSY0362Operon

DOOR ID: 1172039		DSY0362,
DSY0363,
DSY0364,
DSY0365,
DSY0366		 View Structure
4 458681-458865 (-)cobalamin456163-458533 (-)DSY0397

DSY0397Operon

DOOR ID: 1172043		DSY0395,
DSY0396,
DSY0397		 View Structure
5 891858-892005 (+)ydaO-yuaA892121-893009 (+)DSY0738

DSY0738Operon

DOOR ID: 1172111		DSY0738,
DSY0739,
DSY0740,
DSY0741		 View Structure
6 1348493-1348649 (+)MOCO1348766-1349489 (+)DSY1133

DSY1133Single gene

DOOR ID: 1773824		DSY1133 View Structure
7 1425544-1425725 (+)lysine1425847-1426696 (+)DSY1207

DSY1207Single gene

DOOR ID: 1773846		DSY1207 View Structure
8 1602834-1602933 (+)ykkC-yxkD1603032-1603914 (+)DSY1364

Branched-chain-amino-acid aminotransferase (BCAT) (2)		DSY1364Operon

DOOR ID: 1172250		DSY1364,
DSY1365,
DSY1366,
DSY1367		 View Structure
9 1647572-1647684 (+)TPP1647764-1649072 (+)DSY1401

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)		DSY1401Operon

DOOR ID: 1172258		DSY1401,
DSY1402,
DSY1403,
DSY1404,
DSY1405		 View Structure
10 1680437-1680620 (+)cobalamin1681062-1682634 (+)DSY1435

DSY1435Operon

DOOR ID: 1172265		DSY1435,
DSY1436,
DSY1437,
DSY1438,
DSY1439		 View Structure
11 1680704-1680885 (+)cobalamin1681062-1682634 (+)DSY1435

DSY1435Operon

DOOR ID: 1172265		DSY1435,
DSY1436,
DSY1437,
DSY1438,
DSY1439		 View Structure
12 1719165-1719300 (-)ydaO-yuaA1717731-1719144 (-)DSY1473

DSY1473Single gene

DOOR ID: 1773967		DSY1473 View Structure
13 1724778-1724965 (+)cobalamin1725145-1725886 (+)cbiM

Cobalt transport protein CbiM (Energy-coupling factor transporter probable substrate-capture protein CbiM) (ECF transporter S component CbiM)		DSY1479Operon

DOOR ID: 1172271		DSY1479 (cbiM),
DSY1480		 View Structure
14 1874786-1874938 (-)MOCO1872121-1873528 (+)DSY1614

DSY1614Operon

DOOR ID: 1172298		DSY1613,
DSY1614		 View Structure
15 1928734-1928848 (+)FMN1928957-1930076 (+)ribD

Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]		DSY1662Operon

DOOR ID: 1172307		DSY1662 (ribD),
DSY1663 (ribE),
DSY1664 (ribA),
DSY1665 (ribH)		 View Structure
16 2177870-2178006 (-)ydaO-yuaA2177041-2177866 (-)DSY1884

DSY1884Single gene

DOOR ID: 1774161		DSY1884 View Structure
17 2428026-2428169 (+)cobalamin2428252-2429251 (+)DSY2084

DSY2084Operon

DOOR ID: 1172387		DSY2084,
DSY2085,
DSY2086		 View Structure
18 2441450-2441510 (+)fluoride2441586-2441931 (+)DSY2097

Putative fluoride ion transporter CrcB 1		DSY2097Operon

DOOR ID: 1172389		DSY2097,
DSY2098		 View Structure
19 2459292-2459465 (+)cobalamin2459594-2460701 (+)cobT

Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (NN:DBI PRT) (1) (N(1)-alpha-phosphoribosyltransferase)		DSY2114Operon

DOOR ID: 1172396		DSY2114 (cobT),
DSY2115 (cobU),
DSY2116 (cobS)		 View Structure
20 2621143-2621237 (-)c-di-GMP-I2619785-2620955 (-)DSY2267

Na(+)/H(+) antiporter NhaA (Sodium/proton antiporter NhaA)		DSY2267single gene

DOOR ID: 1774331		DSY2267 View Structure
21 3094065-3094247 (-)cobalamin3093184-3093958 (-)DSY2725

DSY2725Operon

DOOR ID: 1172514		DSY2722,
DSY2723,
DSY2724,
DSY2725		 View Structure
22 3279269-3279376 (-)glycine3277973-3279071 (-)DSY2880

Aminomethyltransferase (0) (Glycine cleavage system T protein)		DSY2880Single gene

DOOR ID: 1774554		DSY2880 View Structure
23 3493107-3493239 (-)MOCO3492576-3493026 (-)DSY3087

DSY3087Operon

DOOR ID: 1172590		DSY3083,
DSY3084 (glyQ),
DSY3085,
DSY3086,
DSY3087		 View Structure
24 3900252-3900342 (-)c-di-GMP-I3899382-3899901 (-)DSY3431

Uncharacterized protein		DSY3431single gene

DOOR ID: 1774730		DSY3431 View Structure
25 4208512-4208661 (+)FMN4208692-4209754 (+)DSY3695

DSY3695Single gene

DOOR ID: 1774838		DSY3695 View Structure
26 4256230-4256362 (+)MOCO4256449-4257988 (+)DSY3734

DSY3734Single gene

DOOR ID: 1774859		DSY3734 View Structure
27 4378102-4378234 (-)MOCO4376648-4377959 (-)DSY3839

DSY3839Operon

DOOR ID: 1172747		DSY3831,
DSY3832,
DSY3833,
DSY3834,
DSY3835,
DSY3836,
DSY3837,
DSY3838,
DSY3839		 View Structure
28 4379199-4379378 (-)cobalamin4378388-4379168 (-)DSY3840

DSY3840Single gene

DOOR ID: 1774902		DSY3840 View Structure
29 4411968-4412144 (-)cobalamin4411157-4411832 (-)DSY3859

DSY3859Operon

DOOR ID: 1172751		DSY3856,
DSY3857,
DSY3858,
DSY3859		 View Structure
30 4413523-4413711 (-)cobalamin4412373-4413276 (-)DSY3861

DSY3861Single gene

DOOR ID: 1774913		DSY3861 View Structure
31 4413919-4414098 (-)cobalamin4412373-4413276 (-)DSY3861

DSY3861Single gene

DOOR ID: 1774913		DSY3861 View Structure
32 4431874-4432069 (-)cobalamin4430631-4431696 (-)DSY3874

DSY3874Operon

DOOR ID: 1172755		DSY3872,
DSY3873,
DSY3874		 View Structure
33 4435985-4436173 (-)cobalamin4435332-4435887 (-)cobA

Cob(I)alamin adenosyltransferase		DSY3879Single gene

DOOR ID: 1774918		DSY3879 (cobA) View Structure
34 4479322-4479422 (+)SAM4479503-4480526 (+)DSY3918

Methionine import ATP-binding protein MetN 		DSY3918Operon

DOOR ID: 1172764		DSY3918,
DSY3919		 View Structure
35 4499666-4499767 (-)purine4495505-4499378 (-)DSY3934

DSY3934Operon

DOOR ID: 1172766		DSY3933,
DSY3934		 View Structure
36 4532544-4532670 (-)MOCO4531499-4532471 (-)DSY3966

GTP 3';8-cyclase (2) (Molybdenum cofactor biosynthesis protein A)		DSY3966Operon

DOOR ID: 1172771		DSY3963,
DSY3964,
DSY3965,
DSY3966		 View Structure
37 4549497-4549598 (-)SAM4548361-4549390 (-)DSY3981

Homoserine dehydrogenase 		DSY3981Single gene

DOOR ID: 1774958		DSY3981 View Structure
38 4551167-4551265 (+)SAM4551374-4552511 (+)DSY3983

DSY3983Single gene

DOOR ID: 1774960		DSY3983 View Structure
39 4597555-4597682 (+)ydaO-yuaA4597786-4599028 (+)DSY4027

DSY4027Single gene

DOOR ID: 1774983		DSY4027 View Structure
40 4651401-4651579 (-)cobalamin4650050-4651274 (-)cobL

Precorrin-6Y C(5;15)-methyltransferase		DSY4071Operon

DOOR ID: 1172787		DSY4061 (cobD),
DSY4062 (cobQ),
DSY4063 (cobH),
DSY4064 (cbiX),
DSY4065 (cobK),
DSY4066 (cobJ),
DSY4067 (cbiG),
DSY4068 (cobM),
DSY4069,
DSY4070 (cobI),
DSY4071 (cobL)		 View Structure
41 4798227-4798317 (-)glycine4797781-4798084 (-)DSY4210

DSY4210Operon

DOOR ID: 1172816		DSY4209,
DSY4210		 View Structure
42 4836749-4836847 (-)ykkC-yxkD4836341-4836683 (-)DSY4250

DSY4250Operon

DOOR ID: 1172826		DSY4249,
DSY4250		 View Structure
43 4879337-4879424 (+)c-di-GMP-I4879527-4880589 (+)DSY4293

Uncharacterized protein		DSY4293single gene

DOOR ID: 1775097		DSY4293 View Structure
44 5055037-5055143 (-)TPP5054629-5054926 (-)DSY4448

DSY4448Operon

DOOR ID: 1172865		DSY4445,
DSY4446,
DSY4447,
DSY4448		 View Structure
45 5091094-5091267 (-)glmS5089115-5090939 (-)DSY4485

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)		DSY4485Single gene

DOOR ID: 1775194		DSY4485 View Structure
46 5140118-5140258 (-)ydaO-yuaA5139287-5140115 (-)DSY4528

DSY4528Single gene

DOOR ID: 1775222		DSY4528 View Structure
47 5220127-5220217 (-)c-di-GMP-I5219271-5219826 (-)DSY4596

Uncharacterized protein		DSY4596single gene

DOOR ID: 1775261		DSY4596 View Structure
48 5317463-5317569 (-)SAM5316443-5317367 (-)DSY4686

Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)		DSY4686Operon

DOOR ID: 1172915		DSY4685,
DSY4686		 View Structure
49 5437254-5437338 (+)c-di-GMP-I5437493-5439455 (+)DSY4790

Uncharacterized protein		DSY4790single gene

DOOR ID: 1775336		DSY4790 View Structure
50 5649494-5649668 (-)lysine5648002-5649253 (-)DSY4977

Diaminopimelate decarboxylase (DAP decarboxylase) (DAPDC) (0)		DSY4977Single gene

DOOR ID: 1775410		DSY4977 View Structure
51 5655321-5655400 (+)glycine5655675-5657049 (+)DSY4985

DSY4985Single gene

DOOR ID: 1775418		DSY4985 View Structure
52 5655402-5655495 (+)glycine5655675-5657049 (+)DSY4985

DSY4985Single gene

DOOR ID: 1775418		DSY4985 View Structure