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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
336725-336841
(-)
TPP
335674-336682 (-)
tbpA
Thiamine ABC transporter periplasmic binding protein
Jann_0330
Operon
DOOR ID:
177347
Jann_0328,
Jann_0329
(thiP)
,
Jann_0330
(tbpA)
View Structure
2
678143-678190
(+)
SAM-SAH
678195-679377 (+)
Jann_0706
S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)
Jann_0706
Operon
DOOR ID:
177429
Jann_0703,
Jann_0704,
Jann_0705,
Jann_0706
View Structure
3
1841427-1841505
(+)
sam-alpha
1841575-1842769 (+)
Jann_1854
O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase)
Jann_1854
Operon
DOOR ID:
177671
Jann_1854,
Jann_1855,
Jann_1856
View Structure
4
2259261-2259475
(-)
cobalamin
2258453-2259203 (-)
Jann_2250
Jann_2250
Operon
DOOR ID:
177760
Jann_2247,
Jann_2248,
Jann_2249,
Jann_2250
View Structure
5
2957972-2958160
(-)
cobalamin
2957520-2957940 (-)
Jann_2934
Jann_2934
Operon
DOOR ID:
177904
Jann_2927,
Jann_2928,
Jann_2929
(cobH)
,
Jann_2930,
Jann_2931
(cobN)
,
Jann_2932,
Jann_2933,
Jann_2934
View Structure
6
5064861-5064909
(-)
mini-ykkC
3222882-3223197 (+)
RPC_2945
RPC_4533
Operon
DOOR ID:
1173838
RPC_4531,
RPC_4532,
RPC_4533,
RPC_4534,
RPC_4535,
RPC_4536
View Structure
Genome:
Jannaschia sp. CCS1
(
NC_007802.1
);
Phylum:
Alphaproteobacteria
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