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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
15948-16046
(+)
SAM
16105-17074 (+)
SAOUHSC_00013
SAOUHSC_00013
Single gene
DOOR ID:
1766599
SAOUHSC_00013
View Structure
2
377996-378098
(+)
purine
378328-378907 (+)
SAOUHSC_00372
Xanthine phosphoribosyltransferase (XPRTase) (2)
SAOUHSC_00372
Operon
DOOR ID:
175795
SAOUHSC_00372,
SAOUHSC_00373,
SAOUHSC_00374,
SAOUHSC_00375
(guaA)
View Structure
3
705104-705150
(-)
PreQ1
704265-704934 (-)
SAOUHSC_00721
7-cyano-7-deazaguanine synthase (0) (7-cyano-7-carbaguanine synthase) (PreQ(0) synthase) (Queuosine biosynthesis protein QueC)
SAOUHSC_00721
Operon
DOOR ID:
175860
SAOUHSC_00719,
SAOUHSC_00720,
SAOUHSC_00721
View Structure
4
812928-813031
(+)
SAM
813119-814145 (+)
SAOUHSC_00842
Methionine import ATP-binding protein MetN 2
SAOUHSC_00842
Operon
DOOR ID:
175883
SAOUHSC_00842,
SAOUHSC_00843,
SAOUHSC_00844
View Structure
5
854447-854537
(+)
preQ1-II
855576-855921 (+)
SAOUHSC_00892
SAOUHSC_00892
Single gene
DOOR ID:
1766957
SAOUHSC_00892
View Structure
6
931890-931996
(+)
yybP-ykoY
932071-932875 (+)
SAOUHSC_00957
SAOUHSC_00957
Single gene
DOOR ID:
1766981
SAOUHSC_00957
View Structure
7
993687-993787
(-)
TPP
993034-993610 (-)
SAOUHSC_01022
SAOUHSC_01022
Operon
DOOR ID:
175917
SAOUHSC_01019,
SAOUHSC_01021,
SAOUHSC_01022
View Structure
8
1336571-1336746
(+)
lysine
1336827-1338033 (+)
SAOUHSC_01394
Aspartokinase
SAOUHSC_01394
Operon
DOOR ID:
175988
SAOUHSC_01394,
SAOUHSC_01395,
SAOUHSC_01396,
SAOUHSC_01397,
SAOUHSC_01398
View Structure
9
1458692-1458826
(-)
FMN
1458084-1458630 (-)
SAOUHSC_01505
Riboflavin transporter
SAOUHSC_01505
Single gene
DOOR ID:
1767176
SAOUHSC_01505
View Structure
10
1555983-1556080
(-)
glycine
1554816-1555908 (-)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
SAOUHSC_01634
Operon
DOOR ID:
176036
SAOUHSC_01632,
SAOUHSC_01633,
SAOUHSC_01634
(gcvT)
View Structure
11
1685475-1685650
(-)
lysine
1683836-1685330 (-)
SAOUHSC_01787
SAOUHSC_01787
Single gene
DOOR ID:
1767226
SAOUHSC_01787
View Structure
12
1802089-1802224
(-)
FMN
1800918-1801923 (-)
SAOUHSC_01889
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
SAOUHSC_01889
Operon
DOOR ID:
176090
SAOUHSC_01886
(ribH)
,
SAOUHSC_01887,
SAOUHSC_01888,
SAOUHSC_01889
View Structure
13
1818869-1818979
(-)
SAM
1817569-1818763 (-)
SAOUHSC_01909
S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)
SAOUHSC_01909
Single gene
DOOR ID:
1767284
SAOUHSC_01909
View Structure
14
2162316-2162418
(-)
TPP
2161546-2162236 (-)
SAOUHSC_02331
Aminopyrimidine aminohydrolase (Thiaminase II)
SAOUHSC_02331
Operon
DOOR ID:
176174
SAOUHSC_02328
(thiE)
,
SAOUHSC_02329,
SAOUHSC_02330,
SAOUHSC_02331
View Structure
15
2219068-2219284
(-)
glmS
2217060-2218866 (-)
SAOUHSC_02399
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)
SAOUHSC_02399
Single gene
DOOR ID:
1767446
SAOUHSC_02399
View Structure
16
2391572-2391667
(-)
SAM
2389508-2390015 (-)
SAOUHSC_02600
SAOUHSC_02600
Single gene
DOOR ID:
1767524
SAOUHSC_02600
View Structure
Genome:
Staphylococcus aureus subsp. aureus NCTC 8325
(
NC_007795.1
);
Phylum:
Firmicutes
a:17:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_007795.1";i:2;s:46:"Staphylococcus aureus subsp. aureus NCTC 8325 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:11:"15948-16046";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:11:"16105-17074";i:10;s:1:"+";i:11;s:13:"SAOUHSC_00013";i:12;s:0:"";i:13;s:13:"SAOUHSC_00013";i:14;s:11:"Single gene";i:15;s:7:"1766599";i:16;s:13:"SAOUHSC_00013";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_007795.1";i:2;s:46:"Staphylococcus aureus subsp. aureus NCTC 8325 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"377996-378098";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:13:"378328-378907";i:10;s:1:"+";i:11;s:13:"SAOUHSC_00372";i:12;s:48:"Xanthine phosphoribosyltransferase (XPRTase) (2)";i:13;s:13:"SAOUHSC_00372";i:14;s:6:"Operon";i:15;s:6:"175795";i:16;s:61:"SAOUHSC_00372;SAOUHSC_00373;SAOUHSC_00374;SAOUHSC_00375(guaA)";i:17;s:109:"purine ribonucleoside salvage [GO:0006166]; xanthine metabolic process [GO:0046110]; XMP salvage [GO:0032265]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_007795.1";i:2;s:46:"Staphylococcus aureus subsp. aureus NCTC 8325 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"705104-705150";i:6;s:1:"-";i:7;s:5:"PreQ1";i:8;s:0:"";i:9;s:13:"704265-704934";i:10;s:1:"-";i:11;s:13:"SAOUHSC_00721";i:12;s:126:"7-cyano-7-deazaguanine synthase (0) (7-cyano-7-carbaguanine synthase) (PreQ(0) synthase) (Queuosine biosynthesis protein QueC)";i:13;s:13:"SAOUHSC_00721";i:14;s:6:"Operon";i:15;s:6:"175860";i:16;s:41:"SAOUHSC_00719;SAOUHSC_00720;SAOUHSC_00721";i:17;s:43:"queuosine biosynthetic process [GO:0008616]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_007795.1";i:2;s:46:"Staphylococcus aureus subsp. aureus NCTC 8325 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"812928-813031";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"813119-814145";i:10;s:1:"+";i:11;s:13:"SAOUHSC_00842";i:12;s:45:"Methionine import ATP-binding protein MetN 2 ";i:13;s:13:"SAOUHSC_00842";i:14;s:6:"Operon";i:15;s:6:"175883";i:16;s:41:"SAOUHSC_00842;SAOUHSC_00843;SAOUHSC_00844";i:17;s:33:"methionine transport [GO:0015821]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_007795.1";i:2;s:46:"Staphylococcus aureus subsp. aureus NCTC 8325 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"854447-854537";i:6;s:1:"+";i:7;s:8:"preQ1-II";i:8;s:0:"";i:9;s:13:"855576-855921";i:10;s:1:"+";i:11;s:13:"SAOUHSC_00892";i:12;s:0:"";i:13;s:13:"SAOUHSC_00892";i:14;s:11:"Single gene";i:15;s:7:"1766957";i:16;s:13:"SAOUHSC_00892";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_007795.1";i:2;s:46:"Staphylococcus aureus subsp. aureus NCTC 8325 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"931890-931996";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:13:"932071-932875";i:10;s:1:"+";i:11;s:13:"SAOUHSC_00957";i:12;s:0:"";i:13;s:13:"SAOUHSC_00957";i:14;s:11:"Single gene";i:15;s:7:"1766981";i:16;s:13:"SAOUHSC_00957";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_007795.1";i:2;s:46:"Staphylococcus aureus subsp. aureus NCTC 8325 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"993687-993787";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"993034-993610";i:10;s:1:"-";i:11;s:13:"SAOUHSC_01022";i:12;s:0:"";i:13;s:13:"SAOUHSC_01022";i:14;s:6:"Operon";i:15;s:6:"175917";i:16;s:41:"SAOUHSC_01019;SAOUHSC_01021;SAOUHSC_01022";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_007795.1";i:2;s:46:"Staphylococcus aureus subsp. aureus NCTC 8325 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1336571-1336746";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1336827-1338033";i:10;s:1:"+";i:11;s:13:"SAOUHSC_01394";i:12;s:14:"Aspartokinase ";i:13;s:13:"SAOUHSC_01394";i:14;s:6:"Operon";i:15;s:6:"175988";i:16;s:69:"SAOUHSC_01394;SAOUHSC_01395;SAOUHSC_01396;SAOUHSC_01397;SAOUHSC_01398";i:17;s:105:"lysine biosynthetic process via diaminopimelate [GO:0009089]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_007795.1";i:2;s:46:"Staphylococcus aureus subsp. aureus NCTC 8325 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1458692-1458826";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1458084-1458630";i:10;s:1:"-";i:11;s:13:"SAOUHSC_01505";i:12;s:22:"Riboflavin transporter";i:13;s:13:"SAOUHSC_01505";i:14;s:11:"Single gene";i:15;s:7:"1767176";i:16;s:13:"SAOUHSC_01505";i:17;s:33:"riboflavin transport [GO:0032218]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_007795.1";i:2;s:46:"Staphylococcus aureus subsp. aureus NCTC 8325 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1555983-1556080";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1554816-1555908";i:10;s:1:"-";i:11;s:4:"gcvT";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:13:"SAOUHSC_01634";i:14;s:6:"Operon";i:15;s:6:"176036";i:16;s:47:"SAOUHSC_01632;SAOUHSC_01633;SAOUHSC_01634(gcvT)";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_007795.1";i:2;s:46:"Staphylococcus aureus subsp. aureus NCTC 8325 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1685475-1685650";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1683836-1685330";i:10;s:1:"-";i:11;s:13:"SAOUHSC_01787";i:12;s:0:"";i:13;s:13:"SAOUHSC_01787";i:14;s:11:"Single gene";i:15;s:7:"1767226";i:16;s:13:"SAOUHSC_01787";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_007795.1";i:2;s:46:"Staphylococcus aureus subsp. aureus NCTC 8325 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1802089-1802224";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1800918-1801923";i:10;s:1:"-";i:11;s:13:"SAOUHSC_01889";i:12;s:140:"Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]";i:13;s:13:"SAOUHSC_01889";i:14;s:6:"Operon";i:15;s:6:"176090";i:16;s:61:"SAOUHSC_01886(ribH);SAOUHSC_01887;SAOUHSC_01888;SAOUHSC_01889";i:17;s:75:"riboflavin biosynthetic process [GO:0009231]; RNA modification [GO:0009451]";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_007795.1";i:2;s:46:"Staphylococcus aureus subsp. aureus NCTC 8325 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1818869-1818979";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1817569-1818763";i:10;s:1:"-";i:11;s:13:"SAOUHSC_01909";i:12;s:87:"S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)";i:13;s:13:"SAOUHSC_01909";i:14;s:11:"Single gene";i:15;s:7:"1767284";i:16;s:13:"SAOUHSC_01909";i:17;s:97:"one-carbon metabolic process [GO:0006730]; S-adenosylmethionine biosynthetic process [GO:0006556]";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_007795.1";i:2;s:46:"Staphylococcus aureus subsp. aureus NCTC 8325 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2162316-2162418";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2161546-2162236";i:10;s:1:"-";i:11;s:13:"SAOUHSC_02331";i:12;s:47:"Aminopyrimidine aminohydrolase (Thiaminase II)";i:13;s:13:"SAOUHSC_02331";i:14;s:6:"Operon";i:15;s:6:"176174";i:16;s:61:"SAOUHSC_02328(thiE);SAOUHSC_02329;SAOUHSC_02330;SAOUHSC_02331";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_007795.1";i:2;s:46:"Staphylococcus aureus subsp. aureus NCTC 8325 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2219068-2219284";i:6;s:1:"-";i:7;s:4:"glmS";i:8;s:0:"";i:9;s:15:"2217060-2218866";i:10;s:1:"-";i:11;s:13:"SAOUHSC_02399";i:12;s:240:"Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)";i:13;s:13:"SAOUHSC_02399";i:14;s:11:"Single gene";i:15;s:7:"1767446";i:16;s:13:"SAOUHSC_02399";i:17;s:197:"carbohydrate metabolic process [GO:0005975]; fructose 6-phosphate metabolic process [GO:0006002]; protein N-linked glycosylation [GO:0006487]; UDP-N-acetylglucosamine metabolic process [GO:0006047]";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_007795.1";i:2;s:46:"Staphylococcus aureus subsp. aureus NCTC 8325 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2391572-2391667";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"2389508-2390015";i:10;s:1:"-";i:11;s:13:"SAOUHSC_02600";i:12;s:0:"";i:13;s:13:"SAOUHSC_02600";i:14;s:11:"Single gene";i:15;s:7:"1767524";i:16;s:13:"SAOUHSC_02600";i:17;s:0:"";i:18;s:15:"View Structure ";}}