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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
249576-249677
(+)
yybP-ykoY
249770-250346 (+)
Saro_0241
Saro_0241
Operon
DOOR ID:
175063
Saro_0241,
Saro_0242
View Structure
2
368071-368299
(-)
cobalamin
366836-367889 (-)
Saro_0343
Cobalamin biosynthesis CobW
Saro_0343
Operon
DOOR ID:
175080
Saro_0338,
Saro_0339,
Saro_0340
(cobH)
,
Saro_0341,
Saro_0342
(cobN)
,
Saro_0343
View Structure
3
371723-371957
(-)
cobalamin
369513-371550 (-)
Saro_0345
TonB-dependent receptor
Saro_0345
Operon
DOOR ID:
175081
Saro_0344,
Saro_0345
View Structure
4
1228186-1228384
(+)
cobalamin
1228489-1230394 (+)
Saro_1186
TonB-dependent receptor
Saro_1186
Operon
DOOR ID:
175264
Saro_1186,
Saro_1187,
Saro_1188,
Saro_1189
View Structure
5
1357990-1358057
(+)
SAH
1360154-1360361 (+)
Saro_1313
Saro_1313
Operon
DOOR ID:
175288
Saro_1312,
Saro_1313,
Saro_1314
View Structure
6
1926155-1926262
(+)
TPP
1926311-1928192 (+)
Saro_1824
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Saro_1824
Single gene
DOOR ID:
1766021
Saro_1824
View Structure
7
1949621-1949721
(+)
glycine
1949721-1949846 (+)
Saro_R0028
Saro_R0028
Single gene
DOOR ID:
1766538
Saro_R0028
View Structure
8
1949722-1949846
(+)
glycine
1949879-1951046 (+)
gcvT
Aminomethyltransferase (0)
Saro_1850
Operon
DOOR ID:
175413
Saro_1850
(gcvT)
,
Saro_1851,
Saro_1852,
Saro_1853
View Structure
Genome:
Novosphingobium aromaticivorans DSM 12444
(
NC_007794.1
);
Phylum:
Alphaproteobacteria
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