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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
15975-16073
(+)
SAM
16132-17101 (+)
SAUSA300_0012
Putative homoserine O-acetyltransferase
SAUSA300_0012
Single gene
DOOR ID:
1764752
SAUSA300_0012
View Structure
2
436139-436241
(+)
purine
436471-437050 (+)
xpt
Xanthine phosphoribosyltransferase (XPRTase) (2)
SAUSA300_0386
Operon
DOOR ID:
174588
SAUSA300_0386
(xpt)
,
SAUSA300_0387
(pbuX)
,
SAUSA300_0388
(guaB)
,
SAUSA300_0389
(guaA)
View Structure
3
772096-772142
(-)
PreQ1
771257-771926 (-)
SAUSA300_0697
7-cyano-7-deazaguanine synthase (0) (7-cyano-7-carbaguanine synthase) (PreQ(0) synthase) (Queuosine biosynthesis protein QueC)
SAUSA300_0697
Operon
DOOR ID:
174654
SAUSA300_0695,
SAUSA300_0696,
SAUSA300_0697
View Structure
4
879109-879212
(+)
SAM
879300-880326 (+)
SAUSA300_0796
Methionine import ATP-binding protein MetN 2
SAUSA300_0796
Operon
DOOR ID:
174672
SAUSA300_0796,
SAUSA300_0797,
SAUSA300_0798
View Structure
5
934584-934674
(+)
preQ1-II
935713-936058 (+)
SAUSA300_0858
SAUSA300_0858
Single gene
DOOR ID:
1764624
SAUSA300_0858
View Structure
6
1012027-1012133
(+)
yybP-ykoY
1012208-1013012 (+)
SAUSA300_0922
Membrane protein; TerC family
SAUSA300_0922
Single gene
DOOR ID:
1765337
SAUSA300_0922
View Structure
7
1073812-1073912
(-)
TPP
1073159-1073735 (-)
SAUSA300_0979
SAUSA300_0979
Operon
DOOR ID:
174708
SAUSA300_0977,
SAUSA300_0978,
SAUSA300_0979
View Structure
8
1416547-1416722
(+)
lysine
1416803-1418009 (+)
SAUSA300_1286
Aspartokinase
SAUSA300_1286
Operon
DOOR ID:
174766
SAUSA300_1286,
SAUSA300_1287
(asd)
,
SAUSA300_1288
(dapA)
,
SAUSA300_1289
(dapB)
,
SAUSA300_1290
(dapD)
View Structure
9
1542070-1542204
(-)
FMN
1541462-1542008 (-)
SAUSA300_1374
Riboflavin transporter
SAUSA300_1374
Single gene
DOOR ID:
1765188
SAUSA300_1374
View Structure
10
1652780-1652877
(-)
glycine
1651613-1652705 (-)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
SAUSA300_1498
Operon
DOOR ID:
174814
SAUSA300_1496,
SAUSA300_1497,
SAUSA300_1498
(gcvT)
View Structure
11
1782272-1782447
(-)
lysine
1780633-1782127 (-)
lysP
Lysine-specific permease
SAUSA300_1628
Single gene
DOOR ID:
1765209
SAUSA300_1628
(lysP)
View Structure
12
1898398-1898533
(-)
FMN
1897227-1898232 (-)
ribD
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
SAUSA300_1715
Operon
DOOR ID:
174858
SAUSA300_1712
(ribH)
,
SAUSA300_1713
(ribBA)
,
SAUSA300_1714
(ribE)
,
SAUSA300_1715
(ribD)
View Structure
13
1915177-1915287
(-)
SAM
1913877-1915071 (-)
metK
S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)
SAUSA300_1730
Single gene
DOOR ID:
1764600
SAUSA300_1730
(metK)
View Structure
14
2215394-2215496
(-)
TPP
2214624-2215314 (-)
SAUSA300_2050
Aminopyrimidine aminohydrolase (Thiaminase II)
SAUSA300_2050
Operon
DOOR ID:
174917
SAUSA300_2047
(thiE)
,
SAUSA300_2048
(thiM)
,
SAUSA300_2049
(thiD)
,
SAUSA300_2050
View Structure
15
2272202-2272418
(-)
glmS
2270194-2272000 (-)
glmS
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)
SAUSA300_2104
Single gene
DOOR ID:
1764628
SAUSA300_2104
(glmS)
View Structure
16
2444774-2444869
(-)
SAM
2443383-2444763 (-)
SAUSA300_2273
Na+/H+ antiporter family protein
SAUSA300_2273
Single gene
DOOR ID:
1764809
SAUSA300_2273
View Structure
Genome:
Staphylococcus aureus subsp. aureus USA300 FPR3757
(
NC_007793.1
);
Phylum:
Firmicutes
a:17:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_007793.1";i:2;s:51:"Staphylococcus aureus subsp. aureus USA300 FPR3757 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:11:"15975-16073";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:11:"16132-17101";i:10;s:1:"+";i:11;s:13:"SAUSA300_0012";i:12;s:39:"Putative homoserine O-acetyltransferase";i:13;s:13:"SAUSA300_0012";i:14;s:11:"Single gene";i:15;s:7:"1764752";i:16;s:13:"SAUSA300_0012";i:17;s:53:"cellular amino acid biosynthetic process [GO:0008652]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_007793.1";i:2;s:51:"Staphylococcus aureus subsp. aureus USA300 FPR3757 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"436139-436241";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:13:"436471-437050";i:10;s:1:"+";i:11;s:3:"xpt";i:12;s:48:"Xanthine phosphoribosyltransferase (XPRTase) (2)";i:13;s:13:"SAUSA300_0386";i:14;s:6:"Operon";i:15;s:6:"174588";i:16;s:78:"SAUSA300_0386(xpt);SAUSA300_0387(pbuX);SAUSA300_0388(guaB);SAUSA300_0389(guaA)";i:17;s:109:"purine ribonucleoside salvage [GO:0006166]; xanthine metabolic process [GO:0046110]; XMP salvage [GO:0032265]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_007793.1";i:2;s:51:"Staphylococcus aureus subsp. aureus USA300 FPR3757 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"772096-772142";i:6;s:1:"-";i:7;s:5:"PreQ1";i:8;s:0:"";i:9;s:13:"771257-771926";i:10;s:1:"-";i:11;s:13:"SAUSA300_0697";i:12;s:126:"7-cyano-7-deazaguanine synthase (0) (7-cyano-7-carbaguanine synthase) (PreQ(0) synthase) (Queuosine biosynthesis protein QueC)";i:13;s:13:"SAUSA300_0697";i:14;s:6:"Operon";i:15;s:6:"174654";i:16;s:41:"SAUSA300_0695;SAUSA300_0696;SAUSA300_0697";i:17;s:43:"queuosine biosynthetic process [GO:0008616]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_007793.1";i:2;s:51:"Staphylococcus aureus subsp. aureus USA300 FPR3757 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"879109-879212";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"879300-880326";i:10;s:1:"+";i:11;s:13:"SAUSA300_0796";i:12;s:45:"Methionine import ATP-binding protein MetN 2 ";i:13;s:13:"SAUSA300_0796";i:14;s:6:"Operon";i:15;s:6:"174672";i:16;s:41:"SAUSA300_0796;SAUSA300_0797;SAUSA300_0798";i:17;s:33:"methionine transport [GO:0015821]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_007793.1";i:2;s:51:"Staphylococcus aureus subsp. aureus USA300 FPR3757 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"934584-934674";i:6;s:1:"+";i:7;s:8:"preQ1-II";i:8;s:0:"";i:9;s:13:"935713-936058";i:10;s:1:"+";i:11;s:13:"SAUSA300_0858";i:12;s:0:"";i:13;s:13:"SAUSA300_0858";i:14;s:11:"Single gene";i:15;s:7:"1764624";i:16;s:13:"SAUSA300_0858";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_007793.1";i:2;s:51:"Staphylococcus aureus subsp. aureus USA300 FPR3757 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1012027-1012133";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1012208-1013012";i:10;s:1:"+";i:11;s:13:"SAUSA300_0922";i:12;s:29:"Membrane protein; TerC family";i:13;s:13:"SAUSA300_0922";i:14;s:11:"Single gene";i:15;s:7:"1765337";i:16;s:13:"SAUSA300_0922";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_007793.1";i:2;s:51:"Staphylococcus aureus subsp. aureus USA300 FPR3757 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1073812-1073912";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1073159-1073735";i:10;s:1:"-";i:11;s:13:"SAUSA300_0979";i:12;s:0:"";i:13;s:13:"SAUSA300_0979";i:14;s:6:"Operon";i:15;s:6:"174708";i:16;s:41:"SAUSA300_0977;SAUSA300_0978;SAUSA300_0979";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_007793.1";i:2;s:51:"Staphylococcus aureus subsp. aureus USA300 FPR3757 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1416547-1416722";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1416803-1418009";i:10;s:1:"+";i:11;s:13:"SAUSA300_1286";i:12;s:14:"Aspartokinase ";i:13;s:13:"SAUSA300_1286";i:14;s:6:"Operon";i:15;s:6:"174766";i:16;s:92:"SAUSA300_1286;SAUSA300_1287(asd);SAUSA300_1288(dapA);SAUSA300_1289(dapB);SAUSA300_1290(dapD)";i:17;s:105:"lysine biosynthetic process via diaminopimelate [GO:0009089]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_007793.1";i:2;s:51:"Staphylococcus aureus subsp. aureus USA300 FPR3757 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1542070-1542204";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1541462-1542008";i:10;s:1:"-";i:11;s:13:"SAUSA300_1374";i:12;s:22:"Riboflavin transporter";i:13;s:13:"SAUSA300_1374";i:14;s:11:"Single gene";i:15;s:7:"1765188";i:16;s:13:"SAUSA300_1374";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_007793.1";i:2;s:51:"Staphylococcus aureus subsp. aureus USA300 FPR3757 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1652780-1652877";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1651613-1652705";i:10;s:1:"-";i:11;s:4:"gcvT";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:13:"SAUSA300_1498";i:14;s:6:"Operon";i:15;s:6:"174814";i:16;s:47:"SAUSA300_1496;SAUSA300_1497;SAUSA300_1498(gcvT)";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_007793.1";i:2;s:51:"Staphylococcus aureus subsp. aureus USA300 FPR3757 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1782272-1782447";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1780633-1782127";i:10;s:1:"-";i:11;s:4:"lysP";i:12;s:24:"Lysine-specific permease";i:13;s:13:"SAUSA300_1628";i:14;s:11:"Single gene";i:15;s:7:"1765209";i:16;s:19:"SAUSA300_1628(lysP)";i:17;s:33:"amino acid transport [GO:0006865]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_007793.1";i:2;s:51:"Staphylococcus aureus subsp. aureus USA300 FPR3757 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1898398-1898533";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1897227-1898232";i:10;s:1:"-";i:11;s:4:"ribD";i:12;s:140:"Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]";i:13;s:13:"SAUSA300_1715";i:14;s:6:"Operon";i:15;s:6:"174858";i:16;s:80:"SAUSA300_1712(ribH);SAUSA300_1713(ribBA);SAUSA300_1714(ribE);SAUSA300_1715(ribD)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_007793.1";i:2;s:51:"Staphylococcus aureus subsp. aureus USA300 FPR3757 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1915177-1915287";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1913877-1915071";i:10;s:1:"-";i:11;s:4:"metK";i:12;s:87:"S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)";i:13;s:13:"SAUSA300_1730";i:14;s:11:"Single gene";i:15;s:7:"1764600";i:16;s:19:"SAUSA300_1730(metK)";i:17;s:97:"one-carbon metabolic process [GO:0006730]; S-adenosylmethionine biosynthetic process [GO:0006556]";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_007793.1";i:2;s:51:"Staphylococcus aureus subsp. aureus USA300 FPR3757 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2215394-2215496";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2214624-2215314";i:10;s:1:"-";i:11;s:13:"SAUSA300_2050";i:12;s:47:"Aminopyrimidine aminohydrolase (Thiaminase II)";i:13;s:13:"SAUSA300_2050";i:14;s:6:"Operon";i:15;s:6:"174917";i:16;s:73:"SAUSA300_2047(thiE);SAUSA300_2048(thiM);SAUSA300_2049(thiD);SAUSA300_2050";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_007793.1";i:2;s:51:"Staphylococcus aureus subsp. aureus USA300 FPR3757 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2272202-2272418";i:6;s:1:"-";i:7;s:4:"glmS";i:8;s:0:"";i:9;s:15:"2270194-2272000";i:10;s:1:"-";i:11;s:4:"glmS";i:12;s:240:"Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)";i:13;s:13:"SAUSA300_2104";i:14;s:11:"Single gene";i:15;s:7:"1764628";i:16;s:19:"SAUSA300_2104(glmS)";i:17;s:102:"carbohydrate derivative biosynthetic process [GO:1901137]; carbohydrate metabolic process [GO:0005975]";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_007793.1";i:2;s:51:"Staphylococcus aureus subsp. aureus USA300 FPR3757 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2444774-2444869";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"2443383-2444763";i:10;s:1:"-";i:11;s:13:"SAUSA300_2273";i:12;s:32:"Na+/H+ antiporter family protein";i:13;s:13:"SAUSA300_2273";i:14;s:11:"Single gene";i:15;s:7:"1764809";i:16;s:13:"SAUSA300_2273";i:17;s:0:"";i:18;s:15:"View Structure ";}}