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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
75511-75610
(-)
TPP
74496-75480 (-)
tbpA
Y75_p0068
Operon
DOOR ID:
173673
Y75_p0066
(thiQ)
,
Y75_p0067
(thiP)
,
Y75_p0068
(tbpA)
View Structure
2
817334-817478
(+)
MOCO
818476-818989 (+)
moaB
Y75_p0755
Operon
DOOR ID:
173823
Y75_p0754
(moaA)
,
Y75_p0755
(moaB)
,
Y75_p0756
(moaC)
,
Y75_p0757
(moaD)
,
Y75_p0758
(moaE)
View Structure
3
1459875-1459918
(+)
mini-ykkC
1459938-1463568 (+)
Sde_1127
Sde_1127
Operon
DOOR ID:
179931
Sde_1123,
Sde_1124,
Sde_1125,
Sde_1126,
Sde_1127,
Sde_1128
View Structure
4
1907170-1907271
(+)
yybP-ykoY
1907401-1907968 (+)
yebN
Y75_p1796
Single gene
DOOR ID:
1763324
Y75_p1796
(yebN)
View Structure
5
2188670-2188766
(-)
TPP
2187846-2188635 (-)
thiM
Y75_p2066
Operon
DOOR ID:
174063
Y75_p2063
(yegW)
,
Y75_p2064
(yegX)
,
Y75_p2065
(thiD)
,
Y75_p2066
(thiM)
View Structure
6
3183226-3183374
(-)
FMN
3182468-3183122 (-)
ribB
Y75_p2967
Single gene
DOOR ID:
1763698
Y75_p2967
(ribB)
View Structure
7
3440401-3440501
(+)
TPP
3440581-3442477 (+)
thiC
Y75_p3202
Operon
DOOR ID:
174308
Y75_p3202
(thiC)
,
Y75_p3203
(thiE)
,
Y75_p3204
(thiF)
,
Y75_p3205
(thiS)
,
Y75_p3206
(thiG)
,
Y75_p3207
(thiH)
View Structure
8
3473107-3473297
(-)
cobalamin
3471197-3473042 (-)
btuB
Y75_p3222
Operon
DOOR ID:
174313
Y75_p3221
(murI)
,
Y75_p3222
(btuB)
View Structure
9
4236915-4237111
(-)
lysine
4235473-4236823 (-)
lysC
Y75_p3911
Single gene
DOOR ID:
1764025
Y75_p3911
(lysC)
View Structure
10
4472096-4472211
(+)
Mg sensor
4472304-4475001 (+)
mgtA
Y75_p4127
Single gene
DOOR ID:
1764120
Y75_p4127
(mgtA)
View Structure
Genome:
Escherichia coli str. K-12 substr. W3110
(
NC_007779.1
);
Phylum:
Gammaproteobacteria
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