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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
112283-112481
(-)
cobalamin
109909-112177 (-)
RPB_0102
TonB-dependent siderophore receptor
RPB_0102
Operon
DOOR ID:
172779
RPB_0101,
RPB_0102
View Structure
2
820695-820904
(+)
cobalamin
820977-822066 (+)
RPB_0731
Nickel/cobalt efflux system
RPB_0731
Operon
DOOR ID:
172899
RPB_0731,
RPB_0732,
RPB_0733,
RPB_0734,
RPB_0735
View Structure
3
834069-834289
(-)
cobalamin
833509-834052 (-)
RPB_0741
RPB_0741
Operon
DOOR ID:
172901
RPB_0739,
RPB_0740,
RPB_0741
View Structure
4
887688-887767
(-)
sam-alpha
886385-887612 (-)
RPB_0791
O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase)
RPB_0791
Single gene
DOOR ID:
1760864
RPB_0791
View Structure
5
2225557-2225706
(-)
TPP
2224450-2225467 (-)
RPB_1958
Glycine oxidase ThiO
RPB_1958
Operon
DOOR ID:
173132
RPB_1957,
RPB_1958
View Structure
6
2688370-2688479
(-)
SAH
2686282-2688124 (+)
RPB_2338
RPB_2338
Operon
DOOR ID:
173196
RPB_2335,
RPB_2336,
RPB_2337,
RPB_2338,
RPB_2339
View Structure
7
3360939-3360999
(+)
fluoride
3361242-3361617 (+)
RPB_2950
RPB_2950
Single gene
DOOR ID:
1761854
RPB_2950
View Structure
8
3635632-3635843
(+)
cobalamin
3635953-3636496 (+)
RPB_3177
RPB_3177
Operon
DOOR ID:
173360
RPB_3177,
RPB_3178
(cobH)
,
RPB_3179,
RPB_3180
View Structure
9
3754174-3754381
(-)
cobalamin
3753636-3753963 (-)
RPB_3280
RPB_3280
Single gene
DOOR ID:
1762019
RPB_3280
View Structure
10
3754538-3754747
(+)
cobalamin
3754919-3756017 (+)
RPB_3282
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (NN:DBI PRT) (1) (N(1)-alpha-phosphoribosyltransferase)
RPB_3282
Operon
DOOR ID:
173374
RPB_3282,
RPB_3283
View Structure
11
4276466-4276571
(+)
glycine
4276707-4277856 (+)
gcvT
Glycine cleavage system T protein
RPB_3738
Operon
DOOR ID:
173463
RPB_3738
(gcvT)
,
RPB_3739
View Structure
12
4839098-4839177
(-)
sam-alpha
4837798-4839001 (-)
metX
Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)
RPB_4252
Operon
DOOR ID:
173561
RPB_4251,
RPB_4252
(metX)
View Structure
13
5294881-5295084
(+)
cobalamin
5295192-5297307 (+)
RPB_4681
TonB-dependent receptor
RPB_4681
Single gene
DOOR ID:
1762628
RPB_4681
View Structure
Genome:
Rhodopseudomonas palustris HaA2
(
NC_007778.1
);
Phylum:
Alphaproteobacteria
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homocysteine biosynthetic process [GO:0071268]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_007778.1";i:2;s:32:"Rhodopseudomonas palustris HaA2 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2225557-2225706";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2224450-2225467";i:10;s:1:"-";i:11;s:8:"RPB_1958";i:12;s:20:"Glycine oxidase ThiO";i:13;s:8:"RPB_1958";i:14;s:6:"Operon";i:15;s:6:"173132";i:16;s:17:"RPB_1957;RPB_1958";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_007778.1";i:2;s:32:"Rhodopseudomonas palustris HaA2 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2688370-2688479";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"2686282-2688124";i:10;s:1:"+";i:11;s:8:"RPB_2338";i:12;s:0:"";i:13;s:8:"RPB_2338";i:14;s:6:"Operon";i:15;s:6:"173196";i:16;s:44:"RPB_2335;RPB_2336;RPB_2337;RPB_2338;RPB_2339";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_007778.1";i:2;s:32:"Rhodopseudomonas palustris HaA2 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"3360939-3360999";i:6;s:1:"+";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"3361242-3361617";i:10;s:1:"+";i:11;s:8:"RPB_2950";i:12;s:0:"";i:13;s:8:"RPB_2950";i:14;s:11:"Single gene";i:15;s:7:"1761854";i:16;s:8:"RPB_2950";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_007778.1";i:2;s:32:"Rhodopseudomonas palustris HaA2 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"3635632-3635843";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3635953-3636496";i:10;s:1:"+";i:11;s:8:"RPB_3177";i:12;s:0:"";i:13;s:8:"RPB_3177";i:14;s:6:"Operon";i:15;s:6:"173360";i:16;s:41:"RPB_3177;RPB_3178(cobH);RPB_3179;RPB_3180";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_007778.1";i:2;s:32:"Rhodopseudomonas palustris HaA2 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"3754174-3754381";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3753636-3753963";i:10;s:1:"-";i:11;s:8:"RPB_3280";i:12;s:0:"";i:13;s:8:"RPB_3280";i:14;s:11:"Single gene";i:15;s:7:"1762019";i:16;s:8:"RPB_3280";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_007778.1";i:2;s:32:"Rhodopseudomonas palustris HaA2 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"3754538-3754747";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3754919-3756017";i:10;s:1:"+";i:11;s:8:"RPB_3282";i:12;s:126:"Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (NN:DBI PRT) (1) (N(1)-alpha-phosphoribosyltransferase)";i:13;s:8:"RPB_3282";i:14;s:6:"Operon";i:15;s:6:"173374";i:16;s:17:"RPB_3282;RPB_3283";i:17;s:89:"cobalamin biosynthetic process [GO:0009236]; nucleoside biosynthetic process [GO:0009163]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_007778.1";i:2;s:32:"Rhodopseudomonas palustris HaA2 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"4276466-4276571";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"4276707-4277856";i:10;s:1:"+";i:11;s:4:"gcvT";i:12;s:33:"Glycine cleavage system T protein";i:13;s:8:"RPB_3738";i:14;s:6:"Operon";i:15;s:6:"173463";i:16;s:23:"RPB_3738(gcvT);RPB_3739";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_007778.1";i:2;s:32:"Rhodopseudomonas palustris HaA2 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"4839098-4839177";i:6;s:1:"-";i:7;s:9:"sam-alpha";i:8;s:0:"";i:9;s:15:"4837798-4839001";i:10;s:1:"-";i:11;s:4:"metX";i:12;s:74:"Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)";i:13;s:8:"RPB_4252";i:14;s:6:"Operon";i:15;s:6:"173561";i:16;s:23:"RPB_4251;RPB_4252(metX)";i:17;s:44:"methionine biosynthetic process [GO:0009086]";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_007778.1";i:2;s:32:"Rhodopseudomonas palustris HaA2 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"5294881-5295084";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"5295192-5297307";i:10;s:1:"+";i:11;s:8:"RPB_4681";i:12;s:23:"TonB-dependent receptor";i:13;s:8:"RPB_4681";i:14;s:11:"Single gene";i:15;s:7:"1762628";i:16;s:8:"RPB_4681";i:17;s:0:"";i:18;s:15:"View Structure ";}}
