About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
171206-171311
(-)
fluoride
169410-171030 (-)
CYB_0155
Sodium/hydrogen exchanger/universal stress family protein
CYB_0155
Operon
DOOR ID:
171447
CYB_0154
(crcB)
,
CYB_0155
View Structure
2
292672-292772
(+)
TPP
292777-294145 (+)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
CYB_0278
Single gene
DOOR ID:
1756818
CYB_0278
(thiC)
View Structure
3
1391018-1391170
(+)
cobalamin
1391211-1393182 (+)
CYB_1330
Transporter; outer membrane receptor (OMR) family
CYB_1330
Single gene
DOOR ID:
1757381
CYB_1330
View Structure
4
1971150-1971355
(+)
cobalamin
1971811-1974076 (+)
metE
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)
CYB_1886
Single gene
DOOR ID:
1757707
CYB_1886
(metE)
View Structure
5
2191662-2191743
(-)
glutamine
2191280-2191415 (+)
CYB_2095
CYB_2095
Single gene
DOOR ID:
1757824
CYB_2095
View Structure
6
2454504-2454640
(+)
cobalamin
2454669-2455713 (+)
cbiX
Sirohydrochlorin cobaltochelatase
CYB_2347
Single gene
DOOR ID:
1757967
CYB_2347
(cbiX)
View Structure
7
2690490-2690601
(+)
SAM
2690914-2692159 (+)
metK
S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)
CYB_2590
Single gene
DOOR ID:
1758110
CYB_2590
(metK)
View Structure
8
2902190-2902288
(+)
glutamine
2902367-2902820 (+)
CYB_2802
CYB_2802
Single gene
DOOR ID:
1758217
CYB_2802
View Structure
Genome:
Synechococcus sp. JA-2-3B'a(2-13)
(
NC_007776.1
);
Phylum:
Cyanobacteria/Melainabacteria group
a:9:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_007776.1";i:2;s:34:"Synechococcus sp. JA-2-3B'a(2-13) ";i:3;s:35:"Cyanobacteria/Melainabacteria group";i:4;s:7:"1798711";i:5;s:13:"171206-171311";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:13:"169410-171030";i:10;s:1:"-";i:11;s:8:"CYB_0155";i:12;s:57:"Sodium/hydrogen exchanger/universal stress family protein";i:13;s:8:"CYB_0155";i:14;s:6:"Operon";i:15;s:6:"171447";i:16;s:23:"CYB_0154(crcB);CYB_0155";i:17;s:31:"response to stress [GO:0006950]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_007776.1";i:2;s:34:"Synechococcus sp. JA-2-3B'a(2-13) ";i:3;s:35:"Cyanobacteria/Melainabacteria group";i:4;s:7:"1798711";i:5;s:13:"292672-292772";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"292777-294145";i:10;s:1:"+";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:8:"CYB_0278";i:14;s:11:"Single gene";i:15;s:7:"1756818";i:16;s:14:"CYB_0278(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_007776.1";i:2;s:34:"Synechococcus sp. JA-2-3B'a(2-13) ";i:3;s:35:"Cyanobacteria/Melainabacteria group";i:4;s:7:"1798711";i:5;s:15:"1391018-1391170";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1391211-1393182";i:10;s:1:"+";i:11;s:8:"CYB_1330";i:12;s:49:"Transporter; outer membrane receptor (OMR) family";i:13;s:8:"CYB_1330";i:14;s:11:"Single gene";i:15;s:7:"1757381";i:16;s:8:"CYB_1330";i:17;s:34:"siderophore transport [GO:0015891]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_007776.1";i:2;s:34:"Synechococcus sp. JA-2-3B'a(2-13) ";i:3;s:35:"Cyanobacteria/Melainabacteria group";i:4;s:7:"1798711";i:5;s:15:"1971150-1971355";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1971811-1974076";i:10;s:1:"+";i:11;s:4:"metE";i:12;s:172:"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)";i:13;s:8:"CYB_1886";i:14;s:11:"Single gene";i:15;s:7:"1757707";i:16;s:14:"CYB_1886(metE)";i:17;s:44:"methionine biosynthetic process [GO:0009086]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_007776.1";i:2;s:34:"Synechococcus sp. JA-2-3B'a(2-13) ";i:3;s:35:"Cyanobacteria/Melainabacteria group";i:4;s:7:"1798711";i:5;s:15:"2191662-2191743";i:6;s:1:"-";i:7;s:9:"glutamine";i:8;s:0:"";i:9;s:15:"2191280-2191415";i:10;s:1:"+";i:11;s:8:"CYB_2095";i:12;s:0:"";i:13;s:8:"CYB_2095";i:14;s:11:"Single gene";i:15;s:7:"1757824";i:16;s:8:"CYB_2095";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_007776.1";i:2;s:34:"Synechococcus sp. JA-2-3B'a(2-13) ";i:3;s:35:"Cyanobacteria/Melainabacteria group";i:4;s:7:"1798711";i:5;s:15:"2454504-2454640";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2454669-2455713";i:10;s:1:"+";i:11;s:4:"cbiX";i:12;s:34:"Sirohydrochlorin cobaltochelatase ";i:13;s:8:"CYB_2347";i:14;s:11:"Single gene";i:15;s:7:"1757967";i:16;s:14:"CYB_2347(cbiX)";i:17;s:43:"cobalamin biosynthetic process [GO:0009236]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_007776.1";i:2;s:34:"Synechococcus sp. JA-2-3B'a(2-13) ";i:3;s:35:"Cyanobacteria/Melainabacteria group";i:4;s:7:"1798711";i:5;s:15:"2690490-2690601";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"2690914-2692159";i:10;s:1:"+";i:11;s:4:"metK";i:12;s:87:"S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)";i:13;s:8:"CYB_2590";i:14;s:11:"Single gene";i:15;s:7:"1758110";i:16;s:14:"CYB_2590(metK)";i:17;s:97:"one-carbon metabolic process [GO:0006730]; S-adenosylmethionine biosynthetic process [GO:0006556]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_007776.1";i:2;s:34:"Synechococcus sp. JA-2-3B'a(2-13) ";i:3;s:35:"Cyanobacteria/Melainabacteria group";i:4;s:7:"1798711";i:5;s:15:"2902190-2902288";i:6;s:1:"+";i:7;s:9:"glutamine";i:8;s:0:"";i:9;s:15:"2902367-2902820";i:10;s:1:"+";i:11;s:8:"CYB_2802";i:12;s:0:"";i:13;s:8:"CYB_2802";i:14;s:11:"Single gene";i:15;s:7:"1758217";i:16;s:8:"CYB_2802";i:17;s:0:"";i:18;s:15:"View Structure ";}}