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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
541004-541082
(-)
sam-alpha
539776-540961 (-)
metZ
O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase)
RHE_CH00522
Single gene
DOOR ID:
1752883
RHE_CH00522
(metZ)
View Structure
2
1674687-1674838
(+)
FMN
1674986-1675682 (+)
RHE_CH01591
Putative permease protein
RHE_CH01591
Single gene
DOOR ID:
1753436
RHE_CH01591
View Structure
3
2340809-2340897
(+)
glycine
2341058-2342195 (+)
gcvT
Aminomethyltransferase protein (0)
RHE_CH02241
Operon
DOOR ID:
170235
RHE_CH02241
(gcvT)
,
RHE_CH02242
(gcvH)
,
RHE_CH02243
(gcvP)
View Structure
4
2340901-2340982
(+)
glycine
2341058-2342195 (+)
gcvT
Aminomethyltransferase protein (0)
RHE_CH02241
Operon
DOOR ID:
170235
RHE_CH02241
(gcvT)
,
RHE_CH02242
(gcvH)
,
RHE_CH02243
(gcvP)
View Structure
5
2475573-2475759
(-)
cobalamin
2474841-2475531 (-)
RHE_CH02368
Probable nitroreductase protein
RHE_CH02368
Single gene
DOOR ID:
1753774
RHE_CH02368
View Structure
6
2605278-2605673
(-)
cobalamin
2604370-2604880 (-)
cobU
Bifunctional adenosylcobalamin biosynthesis protein (2)
RHE_CH02491
Operon
DOOR ID:
170282
RHE_CH02488
(cobO)
,
RHE_CH02489
(cobN)
,
RHE_CH02490
(cobW)
,
RHE_CH02491
(cobU)
View Structure
7
2799767-2799909
(+)
FMN
2799988-2800423 (+)
ribH2
6;7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (LS) (Lumazine synthase) (8)
RHE_CH02688
Single gene
DOOR ID:
1753949
RHE_CH02688
(ribH2)
View Structure
8
3619760-3619910
(-)
cobalamin
3619524-3619734 (-)
RHE_CH03438
Hypothetical conserved protein
RHE_CH03438
Single gene
DOOR ID:
1754298
RHE_CH03438
View Structure
9
3940395-3940621
(-)
cobalamin
3939915-3940137 (-)
nrdH
Glutaredoxin protein
RHE_CH03718
Operon
DOOR ID:
170493
RHE_CH03717
(nrdI)
,
RHE_CH03718
(nrdH)
View Structure
10
4094591-4094704
(+)
TPP
4094864-4095671 (+)
RHE_CH03864
Putative nitrate/sulfonate/bicarbonate ABC transporter; permease protein
RHE_CH03864
Operon
DOOR ID:
170524
RHE_CH03864,
RHE_CH03865,
RHE_CH03866
View Structure
11
4272024-4272101
(+)
sam-alpha
4272215-4273073 (+)
metA
Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)
RHE_CH04033
Single gene
DOOR ID:
1754583
RHE_CH04033
(metA)
View Structure
Genome:
Rhizobium etli CFN 42
(
NC_007761.1
);
Phylum:
Alphaproteobacteria
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homocysteine biosynthetic process [GO:0071268]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_007761.1";i:2;s:22:"Rhizobium etli CFN 42 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1674687-1674838";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1674986-1675682";i:10;s:1:"+";i:11;s:11:"RHE_CH01591";i:12;s:25:"Putative permease protein";i:13;s:11:"RHE_CH01591";i:14;s:11:"Single gene";i:15;s:7:"1753436";i:16;s:11:"RHE_CH01591";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_007761.1";i:2;s:22:"Rhizobium etli CFN 42 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2340809-2340897";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"2341058-2342195";i:10;s:1:"+";i:11;s:4:"gcvT";i:12;s:34:"Aminomethyltransferase protein (0)";i:13;s:11:"RHE_CH02241";i:14;s:6:"Operon";i:15;s:6:"170235";i:16;s:53:"RHE_CH02241(gcvT);RHE_CH02242(gcvH);RHE_CH02243(gcvP)";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_007761.1";i:2;s:22:"Rhizobium etli CFN 42 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2340901-2340982";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"2341058-2342195";i:10;s:1:"+";i:11;s:4:"gcvT";i:12;s:34:"Aminomethyltransferase protein (0)";i:13;s:11:"RHE_CH02241";i:14;s:6:"Operon";i:15;s:6:"170235";i:16;s:53:"RHE_CH02241(gcvT);RHE_CH02242(gcvH);RHE_CH02243(gcvP)";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_007761.1";i:2;s:22:"Rhizobium etli CFN 42 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2475573-2475759";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2474841-2475531";i:10;s:1:"-";i:11;s:11:"RHE_CH02368";i:12;s:31:"Probable nitroreductase protein";i:13;s:11:"RHE_CH02368";i:14;s:11:"Single gene";i:15;s:7:"1753774";i:16;s:11:"RHE_CH02368";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_007761.1";i:2;s:22:"Rhizobium etli CFN 42 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2605278-2605673";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2604370-2604880";i:10;s:1:"-";i:11;s:4:"cobU";i:12;s:55:"Bifunctional adenosylcobalamin biosynthesis protein (2)";i:13;s:11:"RHE_CH02491";i:14;s:6:"Operon";i:15;s:6:"170282";i:16;s:71:"RHE_CH02488(cobO);RHE_CH02489(cobN);RHE_CH02490(cobW);RHE_CH02491(cobU)";i:17;s:43:"cobalamin biosynthetic process [GO:0009236]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_007761.1";i:2;s:22:"Rhizobium etli CFN 42 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2799767-2799909";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"2799988-2800423";i:10;s:1:"+";i:11;s:5:"ribH2";i:12;s:84:"6;7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (LS) (Lumazine synthase) (8)";i:13;s:11:"RHE_CH02688";i:14;s:11:"Single gene";i:15;s:7:"1753949";i:16;s:18:"RHE_CH02688(ribH2)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_007761.1";i:2;s:22:"Rhizobium etli CFN 42 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"3619760-3619910";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3619524-3619734";i:10;s:1:"-";i:11;s:11:"RHE_CH03438";i:12;s:30:"Hypothetical conserved protein";i:13;s:11:"RHE_CH03438";i:14;s:11:"Single gene";i:15;s:7:"1754298";i:16;s:11:"RHE_CH03438";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_007761.1";i:2;s:22:"Rhizobium etli CFN 42 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"3940395-3940621";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3939915-3940137";i:10;s:1:"-";i:11;s:4:"nrdH";i:12;s:20:"Glutaredoxin protein";i:13;s:11:"RHE_CH03718";i:14;s:6:"Operon";i:15;s:6:"170493";i:16;s:35:"RHE_CH03717(nrdI);RHE_CH03718(nrdH)";i:17;s:35:"cell redox homeostasis [GO:0045454]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_007761.1";i:2;s:22:"Rhizobium etli CFN 42 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"4094591-4094704";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4094864-4095671";i:10;s:1:"+";i:11;s:11:"RHE_CH03864";i:12;s:72:"Putative nitrate/sulfonate/bicarbonate ABC transporter; permease protein";i:13;s:11:"RHE_CH03864";i:14;s:6:"Operon";i:15;s:6:"170524";i:16;s:35:"RHE_CH03864;RHE_CH03865;RHE_CH03866";i:17;s:36:"transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_007761.1";i:2;s:22:"Rhizobium etli CFN 42 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"4272024-4272101";i:6;s:1:"+";i:7;s:9:"sam-alpha";i:8;s:0:"";i:9;s:15:"4272215-4273073";i:10;s:1:"+";i:11;s:4:"metA";i:12;s:74:"Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)";i:13;s:11:"RHE_CH04033";i:14;s:11:"Single gene";i:15;s:7:"1754583";i:16;s:17:"RHE_CH04033(metA)";i:17;s:108:"L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine [GO:0019281]";i:18;s:15:"View Structure ";}}
