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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
243350-243519
(-)
cobalamin
241138-243136 (-)
SYN_01425
Outer membrane B12 receptor
SYN_01425
Operon
DOOR ID:
168313
SYN_01422,
SYN_01423,
SYN_01425
View Structure
2
245514-245757
(-)
cobalamin
244280-245333 (-)
SYN_01427
ABC-type Fe3+-siderophore transport system; permease component
SYN_01427
Operon
DOOR ID:
168314
SYN_01426,
SYN_01427
View Structure
3
523130-523206
(+)
sam-alpha
523248-523485 (+)
SYN_02335
Hypothetical cytosolic protein
SYN_02335
Single gene
DOOR ID:
1750106
SYN_02335
View Structure
4
1919119-1919252
(+)
ydaO-yuaA
1919440-1920811 (+)
SYN_01091
Potassium uptake protein
SYN_01091
Operon
DOOR ID:
168652
SYN_01091,
SYN_01092
View Structure
5
2063730-2063844
(-)
TPP
2063014-2063704 (-)
SYN_00442
Thiamine-phosphate synthase (TP synthase) (TPS) (Thiamine-phosphate pyrophosphorylase) (TMP pyrophosphorylase) (TMP-PPase)
SYN_00442
Operon
DOOR ID:
168684
SYN_00438,
SYN_00439
(thiH)
,
SYN_00440
(thiG)
,
SYN_00441,
SYN_00442
View Structure
Genome:
Syntrophus aciditrophicus SB
(
NC_007759.1
);
Phylum:
delta/epsilon subdivisions
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