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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
481423-481583
(+)
FMN
481693-482347 (+)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
SG0263
Operon
DOOR ID:
2384707
SG0263
View Structure
2
761422-761536
(-)
TPP
760406-761381 (-)
tbpA
Thiamine ABC transporter periplasmic component (Thiamine-binding periplasmic protein)
SG0433
Operon
DOOR ID:
469916
SG0432
(yajO)
,
SG0433
(dxs)
,
SG0434
(ispA)
,
SG0435
(xseB)
View Structure
3
1073916-1074084
(-)
ykoK
1072819-1073842 (-)
SG0628
Magnesium transport protein (Magnesium transporter MgtE)
SG0628
Operon
DOOR ID:
469950
SG0624
(citX)
,
SG0625
(citF)
,
SG0626
(citE)
,
SG0627
(citD)
,
SG0628
(citC)
View Structure
4
1344556-1344619
(-)
fluoride
1343099-1343399 (+)
SG0791
Cardiolipin synthase B (CL synthase)
SG0791
Operon
DOOR ID:
469984
SG0790
(ybhN)
,
SG0791
(ybhO)
,
SG0792
(ybhP)
View Structure
5
1475425-1475565
(+)
MOCO
1476528-1477011 (+)
SG0909
Cyclic pyranopterin monophosphate synthase (7) (Molybdenum cofactor biosynthesis protein C)
SG0909
Operon
DOOR ID:
470003
SG0907
(dmsA)
,
SG0908
(dmsB)
,
SG0909
(dmsC)
View Structure
6
2202852-2202996
(-)
yybP-ykoY
2202217-2202805 (-)
SG1323
Putative manganese efflux pump MntP
SG1323
Operon
DOOR ID:
470067
SG1323,
SG1324
View Structure
7
2969862-2969962
(-)
TPP
2969237-2969816 (-)
SG1739
Hydroxyethylthiazole kinase (0)
SG1739
Operon
DOOR ID:
2385324
SG1739
(pykF)
View Structure
8
3728538-3728734
(+)
lysine
3728843-3730208 (+)
SG2147
Aspartokinase
SG2147
Operon
DOOR ID:
470180
SG2144
(wcaD)
,
SG2145
(wcaC)
,
SG2146
(wcaB)
,
SG2147
(wcaA)
View Structure
Genome:
Sodalis glossinidius str. 'morsitans'
(
NC_007712.1
);
Phylum:
Gammaproteobacteria
a:9:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_007712.1";i:2;s:38:"Sodalis glossinidius str. 'morsitans' ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"481423-481583";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"481693-482347";i:10;s:1:"+";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:6:"SG0263";i:14;s:6:"Operon";i:15;s:7:"2384707";i:16;s:6:"SG0263";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_007712.1";i:2;s:38:"Sodalis glossinidius str. 'morsitans' ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"761422-761536";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"760406-761381";i:10;s:1:"-";i:11;s:4:"tbpA";i:12;s:85:"Thiamine ABC transporter periplasmic component (Thiamine-binding periplasmic protein)";i:13;s:6:"SG0433";i:14;s:6:"Operon";i:15;s:6:"469916";i:16;s:50:"SG0432(yajO);SG0433(dxs);SG0434(ispA);SG0435(xseB)";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_007712.1";i:2;s:38:"Sodalis glossinidius str. 'morsitans' ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1073916-1074084";i:6;s:1:"-";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"1072819-1073842";i:10;s:1:"-";i:11;s:6:"SG0628";i:12;s:56:"Magnesium transport protein (Magnesium transporter MgtE)";i:13;s:6:"SG0628";i:14;s:6:"Operon";i:15;s:6:"469950";i:16;s:64:"SG0624(citX);SG0625(citF);SG0626(citE);SG0627(citD);SG0628(citC)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_007712.1";i:2;s:38:"Sodalis glossinidius str. 'morsitans' ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1344556-1344619";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"1343099-1343399";i:10;s:1:"+";i:11;s:6:"SG0791";i:12;s:37:"Cardiolipin synthase B (CL synthase) ";i:13;s:6:"SG0791";i:14;s:6:"Operon";i:15;s:6:"469984";i:16;s:38:"SG0790(ybhN);SG0791(ybhO);SG0792(ybhP)";i:17;s:45:"cardiolipin biosynthetic process [GO:0032049]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_007712.1";i:2;s:38:"Sodalis glossinidius str. 'morsitans' ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1475425-1475565";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"1476528-1477011";i:10;s:1:"+";i:11;s:6:"SG0909";i:12;s:91:"Cyclic pyranopterin monophosphate synthase (7) (Molybdenum cofactor biosynthesis protein C)";i:13;s:6:"SG0909";i:14;s:6:"Operon";i:15;s:6:"470003";i:16;s:38:"SG0907(dmsA);SG0908(dmsB);SG0909(dmsC)";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_007712.1";i:2;s:38:"Sodalis glossinidius str. 'morsitans' ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2202852-2202996";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"2202217-2202805";i:10;s:1:"-";i:11;s:6:"SG1323";i:12;s:35:"Putative manganese efflux pump MntP";i:13;s:6:"SG1323";i:14;s:6:"Operon";i:15;s:6:"470067";i:16;s:13:"SG1323;SG1324";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_007712.1";i:2;s:38:"Sodalis glossinidius str. 'morsitans' ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2969862-2969962";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2969237-2969816";i:10;s:1:"-";i:11;s:6:"SG1739";i:12;s:31:"Hydroxyethylthiazole kinase (0)";i:13;s:6:"SG1739";i:14;s:6:"Operon";i:15;s:7:"2385324";i:16;s:12:"SG1739(pykF)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_007712.1";i:2;s:38:"Sodalis glossinidius str. 'morsitans' ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3728538-3728734";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"3728843-3730208";i:10;s:1:"+";i:11;s:6:"SG2147";i:12;s:14:"Aspartokinase ";i:13;s:6:"SG2147";i:14;s:6:"Operon";i:15;s:6:"470180";i:16;s:51:"SG2144(wcaD);SG2145(wcaC);SG2146(wcaB);SG2147(wcaA)";i:17;s:105:"lysine biosynthetic process via diaminopimelate [GO:0009089]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}}