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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
173049-173177
(+)
cobalamin
173678-174653 (+)
SRU_0131
Ribonucleoside-diphosphate reductase; beta subunit
SRU_0131
Single gene
DOOR ID:
1743529
SRU_0131
View Structure
2
399385-399496
(+)
cobalamin
399756-402441 (+)
SRU_0300
Vitamin B12-dependent ribonucleotide reductase
SRU_0300
Single gene
DOOR ID:
1744125
SRU_0300
View Structure
3
443463-443566
(-)
TPP
442679-443393 (-)
SRU_0332
Aminopyrimidine aminohydrolase
SRU_0332
Single gene
DOOR ID:
1743195
SRU_0332
View Structure
4
646360-646469
(+)
SAH
647212-648127 (-)
SRU_0477
Transcriptional regulator; TetR family protein
SRU_0477
Single gene
DOOR ID:
1744385
SRU_0477
View Structure
5
648790-648906
(+)
SAM
649031-650444 (+)
cysD
O-acetylhomoserine sulfhydrylase (9)
SRU_0479
Single gene
DOOR ID:
1743938
SRU_0479
(cysD)
View Structure
6
910080-910202
(-)
TPP
909052-910060 (-)
SRU_0700
ABC transporter; periplasmic binding component
SRU_0700
Single gene
DOOR ID:
1743349
SRU_0700
View Structure
7
1114730-1115082
(-)
cobalamin
1112536-1114513 (-)
SRU_0871
Iron compound TonB-dependent receptor; putative
SRU_0871
Operon
DOOR ID:
165543
SRU_0867,
SRU_0868,
SRU_0869,
SRU_0870,
SRU_0871
View Structure
8
1450673-1450776
(+)
TPP
1450787-1451609 (+)
fabG
3-oxoacyl-[acyl-carrier protein] reductase
SRU_1153
Operon
DOOR ID:
165590
SRU_1153
(fabG)
,
SRU_1154
View Structure
9
1463316-1463434
(-)
SAM
1461992-1463219 (-)
SRU_1161
Cystathionine beta-lyase MetC
SRU_1161
Single gene
DOOR ID:
1744511
SRU_1161
View Structure
10
3502094-3502152
(-)
glutamine
3499216-3501148 (+)
SRU_2832
GAF domain protein
SRU_2832
Single gene
DOOR ID:
1743557
SRU_2832
View Structure
Genome:
Salinibacter ruber DSM 13855
(
NC_007677.1
);
Phylum:
Bacteroidetes/Chlorobi group
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DNA replication [GO:0006260]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_007677.1";i:2;s:29:"Salinibacter ruber DSM 13855 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:13:"443463-443566";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"442679-443393";i:10;s:1:"-";i:11;s:8:"SRU_0332";i:12;s:31:"Aminopyrimidine aminohydrolase ";i:13;s:8:"SRU_0332";i:14;s:11:"Single gene";i:15;s:7:"1743195";i:16;s:8:"SRU_0332";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_007677.1";i:2;s:29:"Salinibacter ruber DSM 13855 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:13:"646360-646469";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:13:"647212-648127";i:10;s:1:"-";i:11;s:8:"SRU_0477";i:12;s:46:"Transcriptional regulator; TetR family protein";i:13;s:8:"SRU_0477";i:14;s:11:"Single gene";i:15;s:7:"1744385";i:16;s:8:"SRU_0477";i:17;s:107:"negative regulation of transcription; 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putative";i:13;s:8:"SRU_0871";i:14;s:6:"Operon";i:15;s:6:"165543";i:16;s:44:"SRU_0867;SRU_0868;SRU_0869;SRU_0870;SRU_0871";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_007677.1";i:2;s:29:"Salinibacter ruber DSM 13855 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"1450673-1450776";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1450787-1451609";i:10;s:1:"+";i:11;s:4:"fabG";i:12;s:42:"3-oxoacyl-[acyl-carrier protein] reductase";i:13;s:8:"SRU_1153";i:14;s:6:"Operon";i:15;s:6:"165590";i:16;s:23:"SRU_1153(fabG);SRU_1154";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_007677.1";i:2;s:29:"Salinibacter ruber DSM 13855 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"1463316-1463434";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1461992-1463219";i:10;s:1:"-";i:11;s:8:"SRU_1161";i:12;s:29:"Cystathionine beta-lyase MetC";i:13;s:8:"SRU_1161";i:14;s:11:"Single gene";i:15;s:7:"1744511";i:16;s:8:"SRU_1161";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_007677.1";i:2;s:29:"Salinibacter ruber DSM 13855 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"3502094-3502152";i:6;s:1:"-";i:7;s:9:"glutamine";i:8;s:0:"";i:9;s:15:"3499216-3501148";i:10;s:1:"+";i:11;s:8:"SRU_2832";i:12;s:18:"GAF domain protein";i:13;s:8:"SRU_2832";i:14;s:11:"Single gene";i:15;s:7:"1743557";i:16;s:8:"SRU_2832";i:17;s:23:"chemotaxis [GO:0006935]";i:18;s:15:"View Structure ";}}
