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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
679358-679506
(+)
FMN
680435-681158 (-)
BTH_I0596
HAD-superfamily hydrolase
BTH_I0596
Operon
DOOR ID:
164817
BTH_I0596,
BTH_I0597
View Structure
2
947647-947909
(+)
cobalamin
947976-950019 (+)
BTH_I0834
TonB dependent receptor family protein (Vitamin B12 receptor BtuB; putative)
BTH_I0834
Operon
DOOR ID:
164865
BTH_I0834,
BTH_I0835,
BTH_I0836,
BTH_I0837
(cobT)
,
BTH_I0838
(cobS)
,
BTH_I0839
View Structure
3
1025564-1025634
(-)
SAH
1023582-1024923 (+)
BTH_I0897
ABC transporter family protein (ABC transporter; ATP-binding protein)
BTH_I0897
Operon
DOOR ID:
164880
BTH_I0896,
BTH_I0897
View Structure
4
1252827-1252874
(-)
mini-ykkC
1252491-1252809 (-)
Jann_1290
Jann_1290
Operon
DOOR ID:
177546
Jann_1289,
Jann_1290
View Structure
5
1555456-1555556
(+)
ZMP-ZTP
1555702-1556950 (+)
glyA
Serine hydroxymethyltransferase 1 (SHMT 1) (Serine methylase 1)
BTH_I1379
Operon
DOOR ID:
164987
BTH_I1379
(glyA)
,
BTH_I1380
(nrdR)
View Structure
6
1811102-1811256
(-)
yybP-ykoY
1810470-1811043 (-)
BTH_I1609
BTH_I1609
Single gene
DOOR ID:
1742569
BTH_I1609
View Structure
7
2726668-2726875
(+)
cobalamin
2726983-2728423 (+)
BTH_I2398
Nitrite/sulfite reductase domain protein (Precorrin-3B synthase) (3)
BTH_I2398
Operon
DOOR ID:
165197
BTH_I2398,
BTH_I2399
(cobH)
,
BTH_I2400
(cobI)
View Structure
8
2743828-2744087
(-)
cobalamin
2742419-2743814 (-)
BTH_I2409
Nickel/cobalt efflux system
BTH_I2409
Operon
DOOR ID:
165200
BTH_I2407
(cobN)
,
BTH_I2408,
BTH_I2409
View Structure
9
2744266-2744426
(+)
cobalamin
2745106-2745709 (+)
cobO
Cob(I)yrinic acid a;c-diamide adenosyltransferase (7) (Cob(I)alamin adenosyltransferase) (Corrinoid adenosyltransferase)
BTH_I2411
Operon
DOOR ID:
165201
BTH_I2410,
BTH_I2411
(cobO)
,
BTH_I2412
View Structure
10
3261205-3261322
(+)
TPP
3261444-3263391 (+)
BTH_I2844
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
BTH_I2844
Single gene
DOOR ID:
1742295
BTH_I2844
View Structure
11
3446111-3446241
(-)
TPP
3444751-3445885 (-)
BTH_I3008
FAD dependent oxidoreductase family protein (Oxidoreductase; FAD-binding)
BTH_I3008
Operon
DOOR ID:
165324
BTH_I3005,
BTH_I3006
(thiG)
,
BTH_I3007
(thiS)
,
BTH_I3008
View Structure
12
3610278-3610417
(-)
SAH
3608821-3610243 (-)
ahcY
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
BTH_I3165
Single gene
DOOR ID:
1742410
BTH_I3165
(ahcY)
View Structure
13
3715169-3715305
(-)
glycine
3713479-3713860 (-)
gcvH
Glycine cleavage system H protein
BTH_I3254
Operon
DOOR ID:
165366
BTH_I3254
(gcvH)
,
BTH_I3255,
BTH_I3256
View Structure
14
3715338-3715450
(-)
glycine
3713479-3713860 (-)
gcvH
Glycine cleavage system H protein
BTH_I3254
Operon
DOOR ID:
165366
BTH_I3254
(gcvH)
,
BTH_I3255,
BTH_I3256
View Structure
Genome:
Burkholderia thailandensis E264 chromosome I
(
NC_007651.1
);
Phylum:
Betaproteobacteria
a:15:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_007651.1";i:2;s:44:"Burkholderia thailandensis E264 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"679358-679506";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"680435-681158";i:10;s:1:"-";i:11;s:9:"BTH_I0596";i:12;s:25:"HAD-superfamily hydrolase";i:13;s:9:"BTH_I0596";i:14;s:6:"Operon";i:15;s:6:"164817";i:16;s:19:"BTH_I0596;BTH_I0597";i:17;s:30:"metabolic process [GO:0008152]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_007651.1";i:2;s:44:"Burkholderia thailandensis E264 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"947647-947909";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"947976-950019";i:10;s:1:"+";i:11;s:9:"BTH_I0834";i:12;s:76:"TonB dependent receptor family protein (Vitamin B12 receptor BtuB; putative)";i:13;s:9:"BTH_I0834";i:14;s:6:"Operon";i:15;s:6:"164865";i:16;s:71:"BTH_I0834;BTH_I0835;BTH_I0836;BTH_I0837(cobT);BTH_I0838(cobS);BTH_I0839";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_007651.1";i:2;s:44:"Burkholderia thailandensis E264 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1025564-1025634";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"1023582-1024923";i:10;s:1:"+";i:11;s:9:"BTH_I0897";i:12;s:69:"ABC transporter family protein (ABC transporter; ATP-binding protein)";i:13;s:9:"BTH_I0897";i:14;s:6:"Operon";i:15;s:6:"164880";i:16;s:19:"BTH_I0896;BTH_I0897";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_007651.1";i:2;s:44:"Burkholderia thailandensis E264 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1252827-1252874";i:6;s:1:"-";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"1252491-1252809";i:10;s:1:"-";i:11;s:9:"Jann_1290";i:12;s:0:"";i:13;s:9:"Jann_1290";i:14;s:6:"Operon";i:15;s:6:"177546";i:16;s:19:"Jann_1289;Jann_1290";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_007651.1";i:2;s:44:"Burkholderia thailandensis E264 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1555456-1555556";i:6;s:1:"+";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:15:"1555702-1556950";i:10;s:1:"+";i:11;s:4:"glyA";i:12;s:64:"Serine hydroxymethyltransferase 1 (SHMT 1) (Serine methylase 1) ";i:13;s:9:"BTH_I1379";i:14;s:6:"Operon";i:15;s:6:"164987";i:16;s:31:"BTH_I1379(glyA);BTH_I1380(nrdR)";i:17;s:100:"glycine biosynthetic process from serine [GO:0019264]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_007651.1";i:2;s:44:"Burkholderia thailandensis E264 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1811102-1811256";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1810470-1811043";i:10;s:1:"-";i:11;s:9:"BTH_I1609";i:12;s:0:"";i:13;s:9:"BTH_I1609";i:14;s:11:"Single gene";i:15;s:7:"1742569";i:16;s:9:"BTH_I1609";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_007651.1";i:2;s:44:"Burkholderia thailandensis E264 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2726668-2726875";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2726983-2728423";i:10;s:1:"+";i:11;s:9:"BTH_I2398";i:12;s:68:"Nitrite/sulfite reductase domain protein (Precorrin-3B synthase) (3)";i:13;s:9:"BTH_I2398";i:14;s:6:"Operon";i:15;s:6:"165197";i:16;s:41:"BTH_I2398;BTH_I2399(cobH);BTH_I2400(cobI)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_007651.1";i:2;s:44:"Burkholderia thailandensis E264 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2743828-2744087";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2742419-2743814";i:10;s:1:"-";i:11;s:9:"BTH_I2409";i:12;s:27:"Nickel/cobalt efflux system";i:13;s:9:"BTH_I2409";i:14;s:6:"Operon";i:15;s:6:"165200";i:16;s:35:"BTH_I2407(cobN);BTH_I2408;BTH_I2409";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_007651.1";i:2;s:44:"Burkholderia thailandensis E264 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2744266-2744426";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2745106-2745709";i:10;s:1:"+";i:11;s:4:"cobO";i:12;s:120:"Cob(I)yrinic acid a;c-diamide adenosyltransferase (7) (Cob(I)alamin adenosyltransferase) (Corrinoid adenosyltransferase)";i:13;s:9:"BTH_I2411";i:14;s:6:"Operon";i:15;s:6:"165201";i:16;s:35:"BTH_I2410;BTH_I2411(cobO);BTH_I2412";i:17;s:108:"cobalamin biosynthetic process [GO:0009236]; porphyrin-containing compound biosynthetic process [GO:0006779]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_007651.1";i:2;s:44:"Burkholderia thailandensis E264 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3261205-3261322";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3261444-3263391";i:10;s:1:"+";i:11;s:9:"BTH_I2844";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:9:"BTH_I2844";i:14;s:11:"Single gene";i:15;s:7:"1742295";i:16;s:9:"BTH_I2844";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_007651.1";i:2;s:44:"Burkholderia thailandensis E264 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3446111-3446241";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3444751-3445885";i:10;s:1:"-";i:11;s:9:"BTH_I3008";i:12;s:73:"FAD dependent oxidoreductase family protein (Oxidoreductase; FAD-binding)";i:13;s:9:"BTH_I3008";i:14;s:6:"Operon";i:15;s:6:"165324";i:16;s:51:"BTH_I3005;BTH_I3006(thiG);BTH_I3007(thiS);BTH_I3008";i:17;s:43:"D-amino acid metabolic process [GO:0046416]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_007651.1";i:2;s:44:"Burkholderia thailandensis E264 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3610278-3610417";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"3608821-3610243";i:10;s:1:"-";i:11;s:4:"ahcY";i:12;s:73:"Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)";i:13;s:9:"BTH_I3165";i:14;s:11:"Single gene";i:15;s:7:"1742410";i:16;s:15:"BTH_I3165(ahcY)";i:17;s:96:"one-carbon metabolic process [GO:0006730]; S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_007651.1";i:2;s:44:"Burkholderia thailandensis E264 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3715169-3715305";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"3713479-3713860";i:10;s:1:"-";i:11;s:4:"gcvH";i:12;s:33:"Glycine cleavage system H protein";i:13;s:9:"BTH_I3254";i:14;s:6:"Operon";i:15;s:6:"165366";i:16;s:35:"BTH_I3254(gcvH);BTH_I3255;BTH_I3256";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_007651.1";i:2;s:44:"Burkholderia thailandensis E264 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3715338-3715450";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"3713479-3713860";i:10;s:1:"-";i:11;s:4:"gcvH";i:12;s:33:"Glycine cleavage system H protein";i:13;s:9:"BTH_I3254";i:14;s:6:"Operon";i:15;s:6:"165366";i:16;s:35:"BTH_I3254(gcvH);BTH_I3255;BTH_I3256";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}}