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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
150496-150600
(+)
TPP
150708-152625 (+)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
HCH_00137
Operon
DOOR ID:
163021
HCH_00137
(thiC)
,
HCH_00138
(thiO)
,
HCH_00139
(thiS)
,
HCH_00140
(thiG)
,
HCH_00141
(thiE)
View Structure
2
953312-953509
(+)
cobalamin
953620-955567 (+)
btuB
Outer membrane cobalamin receptor protein
HCH_00960
Operon
DOOR ID:
163167
HCH_00960
(btuB)
,
HCH_00961,
HCH_00962
(cobQ)
,
HCH_00963
(cobU)
View Structure
3
1396361-1396507
(-)
FMN
1395063-1395531 (+)
HCH_01387
Uncharacterized conserved protein
HCH_01387
Operon
DOOR ID:
163229
HCH_01386,
HCH_01387
View Structure
4
1622980-1623118
(-)
TPP
1621908-1622928 (-)
tbpA
Thiamin/thiamin pyrophosphate ABC transporter; thiamin/thiamin pyrophospate-bind
HCH_01612
Operon
DOOR ID:
163270
HCH_01610
(thiQ)
,
HCH_01611
(thiP)
,
HCH_01612
(tbpA)
View Structure
5
3815691-3815862
(-)
yybP-ykoY
3815108-3815684 (-)
HCH_03668
Predicted membrane protein
HCH_03668
Single gene
DOOR ID:
1739466
HCH_03668
View Structure
6
6598748-6598960
(+)
cobalamin
6599268-6600066 (+)
HCH_06465
Predicted integral membrane protein
HCH_06465
Operon
DOOR ID:
164117
HCH_06465,
HCH_06466
(bchI)
,
HCH_06467
(cobO)
,
HCH_06468
(cbiA)
,
HCH_06469
(cbiD)
,
HCH_06470
(cobK)
,
HCH_06472,
HCH_06473
(cobH)
,
HCH_06474
(cobL)
,
HCH_06475
(cobI)
,
HCH_06476
(cbiG)
,
HCH_06478
(cobJ)
,
HCH_06479
(cobM)
View Structure
7
6944621-6944896
(-)
cobalamin
6942701-6943673 (-)
HCH_06831
ABC-type Fe3+-siderophore transport system; permease component
HCH_06831
Operon
DOOR ID:
164177
HCH_06829,
HCH_06831,
HCH_06832
View Structure
8
7046067-7046289
(-)
cobalamin
7043081-7045943 (-)
HCH_06929
Vitamin B12-dependent ribonucleotide reductase
HCH_06929
Operon
DOOR ID:
164193
HCH_06928,
HCH_06929
View Structure
Genome:
Hahella chejuensis KCTC 2396
(
NC_007645.1
);
Phylum:
Gammaproteobacteria
a:9:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_007645.1";i:2;s:29:"Hahella chejuensis KCTC 2396 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"150496-150600";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"150708-152625";i:10;s:1:"+";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:9:"HCH_00137";i:14;s:6:"Operon";i:15;s:6:"163021";i:16;s:79:"HCH_00137(thiC);HCH_00138(thiO);HCH_00139(thiS);HCH_00140(thiG);HCH_00141(thiE)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_007645.1";i:2;s:29:"Hahella chejuensis KCTC 2396 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"953312-953509";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"953620-955567";i:10;s:1:"+";i:11;s:4:"btuB";i:12;s:41:"Outer membrane cobalamin receptor protein";i:13;s:9:"HCH_00960";i:14;s:6:"Operon";i:15;s:6:"163167";i:16;s:57:"HCH_00960(btuB);HCH_00961;HCH_00962(cobQ);HCH_00963(cobU)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_007645.1";i:2;s:29:"Hahella chejuensis KCTC 2396 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1396361-1396507";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1395063-1395531";i:10;s:1:"+";i:11;s:9:"HCH_01387";i:12;s:33:"Uncharacterized conserved protein";i:13;s:9:"HCH_01387";i:14;s:6:"Operon";i:15;s:6:"163229";i:16;s:19:"HCH_01386;HCH_01387";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_007645.1";i:2;s:29:"Hahella chejuensis KCTC 2396 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1622980-1623118";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1621908-1622928";i:10;s:1:"-";i:11;s:4:"tbpA";i:12;s:80:"Thiamin/thiamin pyrophosphate ABC transporter; thiamin/thiamin pyrophospate-bind";i:13;s:9:"HCH_01612";i:14;s:6:"Operon";i:15;s:6:"163270";i:16;s:47:"HCH_01610(thiQ);HCH_01611(thiP);HCH_01612(tbpA)";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_007645.1";i:2;s:29:"Hahella chejuensis KCTC 2396 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3815691-3815862";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"3815108-3815684";i:10;s:1:"-";i:11;s:9:"HCH_03668";i:12;s:26:"Predicted membrane protein";i:13;s:9:"HCH_03668";i:14;s:11:"Single gene";i:15;s:7:"1739466";i:16;s:9:"HCH_03668";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_007645.1";i:2;s:29:"Hahella chejuensis KCTC 2396 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"6598748-6598960";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"6599268-6600066";i:10;s:1:"+";i:11;s:9:"HCH_06465";i:12;s:35:"Predicted integral membrane protein";i:13;s:9:"HCH_06465";i:14;s:6:"Operon";i:15;s:6:"164117";i:16;s:195:"HCH_06465;HCH_06466(bchI);HCH_06467(cobO);HCH_06468(cbiA);HCH_06469(cbiD);HCH_06470(cobK);HCH_06472;HCH_06473(cobH);HCH_06474(cobL);HCH_06475(cobI);HCH_06476(cbiG);HCH_06478(cobJ);HCH_06479(cobM)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_007645.1";i:2;s:29:"Hahella chejuensis KCTC 2396 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"6944621-6944896";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"6942701-6943673";i:10;s:1:"-";i:11;s:9:"HCH_06831";i:12;s:62:"ABC-type Fe3+-siderophore transport system; permease component";i:13;s:9:"HCH_06831";i:14;s:6:"Operon";i:15;s:6:"164177";i:16;s:29:"HCH_06829;HCH_06831;HCH_06832";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_007645.1";i:2;s:29:"Hahella chejuensis KCTC 2396 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"7046067-7046289";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"7043081-7045943";i:10;s:1:"-";i:11;s:9:"HCH_06929";i:12;s:47:"Vitamin B12-dependent ribonucleotide reductase ";i:13;s:9:"HCH_06929";i:14;s:6:"Operon";i:15;s:6:"164193";i:16;s:19:"HCH_06928;HCH_06929";i:17;s:67:"DNA biosynthetic process [GO:0071897]; DNA replication [GO:0006260]";i:18;s:15:"View Structure ";}}