RiboswitchDB

Genome: Brucella melitensis biovar Abortus 2308 chromosome II (NC_007624.1); Phylum: Alphaproteobacteria

S.No.

Riboswitch Location and Strand

Riboswitch class

Downstream gene location and Strand

Downstream gene name/gene product description

Locus_tag of downstream gene

Single gene/within operon (According to DOOR database)

Operon details (List of genes within operon and their Locus_tag)

Predicted Structure

1

478504-478736 (+)

cobalamin

478935-479970 (+)

BAB2_0483

Periplasmic binding protein

Operon

DOOR ID: 160420

BAB2_0482,
BAB2_0483,
BAB2_0484,
BAB2_0485

2

503728-503812 (+)

glycine

505059-505437 (+)

gcvH

Glycine cleavage system H protein

Operon

DOOR ID: 160425

BAB2_0513 (gcvT),
BAB2_0514 (gcvH),
BAB2_0515 (gcvP)

3

542916-543079 (-)

FMN

541552-542362 (+)

BAB2_0544

Sulfur carrier protein FdhD

Single gene

DOOR ID: 1733335

BAB2_0544

4

873899-874112 (-)

cobalamin

873325-873547 (-)

nrdH

Glutaredoxin

Operon

DOOR ID: 160489

BAB2_0888 (nrdF),
BAB2_0889 (nrdE),
BAB2_0890 (nrdI),
BAB2_0891 (nrdH)

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";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_007624.1";i:2;s:53:"Brucella melitensis biovar Abortus 2308 chromosome II";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"503728-503812";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:13:"505059-505437";i:10;s:1:"+";i:11;s:4:"gcvH";i:12;s:33:"Glycine cleavage system H protein";i:13;s:9:"BAB2_0514";i:14;s:6:"Operon";i:15;s:6:"160425";i:16;s:47:"BAB2_0513(gcvT);BAB2_0514(gcvH);BAB2_0515(gcvP)";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure
";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_007624.1";i:2;s:53:"Brucella melitensis biovar Abortus 2308 chromosome II";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"542916-543079";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"541552-542362";i:10;s:1:"+";i:11;s:9:"BAB2_0544";i:12;s:27:"Sulfur carrier protein FdhD";i:13;s:9:"BAB2_0544";i:14;s:11:"Single gene";i:15;s:7:"1733335";i:16;s:9:"BAB2_0544";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure
";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_007624.1";i:2;s:53:"Brucella melitensis biovar Abortus 2308 chromosome II";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"873899-874112";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"873325-873547";i:10;s:1:"-";i:11;s:4:"nrdH";i:12;s:12:"Glutaredoxin";i:13;s:9:"BAB2_0891";i:14;s:6:"Operon";i:15;s:6:"160489";i:16;s:63:"BAB2_0888(nrdF);BAB2_0889(nrdE);BAB2_0890(nrdI);BAB2_0891(nrdH)";i:17;s:35:"cell redox homeostasis [GO:0045454]";i:18;s:15:"View Structure
";}}