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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
15932-16030
(+)
SAM
16089-17058 (+)
SAB0012
SAB0012
Single gene
DOOR ID:
1732084
SAB0012
View Structure
2
383497-383599
(+)
purine
383829-384408 (+)
xpt
Xanthine phosphoribosyltransferase (XPRTase) (2)
SAB0338
Operon
DOOR ID:
159913
SAB0338
(xpt)
,
SAB0339
(pbuX)
,
SAB0340
(guaB)
,
SAB0341
(guaA)
View Structure
3
726437-726483
(-)
PreQ1
725598-726267 (-)
SAB0661c
7-cyano-7-deazaguanine synthase (0) (7-cyano-7-carbaguanine synthase) (PreQ(0) synthase) (Queuosine biosynthesis protein QueC)
SAB0661c
Operon
DOOR ID:
159979
SAB0659c,
SAB0660c,
SAB0661c
View Structure
4
837541-837644
(+)
SAM
837732-838758 (+)
SAB0768
Methionine import ATP-binding protein MetN 2
SAB0768
Operon
DOOR ID:
159996
SAB0768,
SAB0769,
SAB0770
View Structure
5
886053-886143
(+)
preQ1-II
887149-887527 (+)
SAB0822
SAB0822
Single gene
DOOR ID:
1732421
SAB0822
View Structure
6
962685-962791
(+)
yybP-ykoY
962866-963670 (+)
SAB0887
SAB0887
Single gene
DOOR ID:
1732445
SAB0887
View Structure
7
1025291-1025391
(-)
TPP
1024638-1025214 (-)
SAB0944c
SAB0944c
Operon
DOOR ID:
160028
SAB0942c,
SAB0943c,
SAB0944c
View Structure
8
1364012-1364187
(+)
lysine
1364268-1365474 (+)
lysC
SAB1248
Operon
DOOR ID:
160085
SAB1248
(lysC)
,
SAB1249
(asd)
,
SAB1250
(dapA)
,
SAB1251
(dapB)
,
SAB1252
(dapD)
View Structure
9
1476556-1476690
(-)
FMN
1475948-1476494 (-)
SAB1347c
SAB1347c
Single gene
DOOR ID:
1732629
SAB1347c
View Structure
10
1532045-1532142
(-)
glycine
1530878-1531970 (-)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
SAB1409c
Operon
DOOR ID:
160121
SAB1407c,
SAB1408c,
SAB1409c
(gcvT)
View Structure
11
1661366-1661541
(-)
lysine
1659726-1661220 (-)
lysP
SAB1541c
Single gene
DOOR ID:
1732675
SAB1541c
(lysP)
View Structure
12
1775249-1775384
(-)
FMN
1774078-1775122 (-)
ribD
SAB1628c
Operon
DOOR ID:
160164
SAB1625c
(ribH)
,
SAB1626c
(ribA)
,
SAB1627c
(ribE)
,
SAB1628c
(ribD)
View Structure
13
1790282-1790392
(-)
SAM
1788982-1790176 (-)
SAB1645c
S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)
SAB1645c
Single gene
DOOR ID:
1732074
SAB1645c
View Structure
14
2114099-2114201
(-)
TPP
2113329-2114019 (-)
tenA
Aminopyrimidine aminohydrolase (Thiaminase II)
SAB1978c
Single gene
DOOR ID:
1732842
SAB1978c
(tenA)
View Structure
15
2168012-2168228
(-)
glmS
2166004-2167810 (-)
glmS
SAB2034c
Single gene
DOOR ID:
1732870
SAB2034c
(glmS)
View Structure
16
2333462-2333557
(-)
SAM
2332089-2333451 (-)
SAB2203c
SAB2203c
Single gene
DOOR ID:
1732942
SAB2203c
View Structure
Genome:
Staphylococcus aureus RF122
(
NC_007622.1
);
Phylum:
Firmicutes
a:17:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_007622.1";i:2;s:27:"Staphylococcus aureus RF122";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:11:"15932-16030";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:11:"16089-17058";i:10;s:1:"+";i:11;s:7:"SAB0012";i:12;s:0:"";i:13;s:7:"SAB0012";i:14;s:11:"Single gene";i:15;s:7:"1732084";i:16;s:7:"SAB0012";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_007622.1";i:2;s:27:"Staphylococcus aureus RF122";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"383497-383599";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:13:"383829-384408";i:10;s:1:"+";i:11;s:3:"xpt";i:12;s:48:"Xanthine phosphoribosyltransferase (XPRTase) (2)";i:13;s:7:"SAB0338";i:14;s:6:"Operon";i:15;s:6:"159913";i:16;s:54:"SAB0338(xpt);SAB0339(pbuX);SAB0340(guaB);SAB0341(guaA)";i:17;s:109:"purine ribonucleoside salvage [GO:0006166]; xanthine metabolic process [GO:0046110]; XMP salvage [GO:0032265]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_007622.1";i:2;s:27:"Staphylococcus aureus RF122";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"726437-726483";i:6;s:1:"-";i:7;s:5:"PreQ1";i:8;s:0:"";i:9;s:13:"725598-726267";i:10;s:1:"-";i:11;s:8:"SAB0661c";i:12;s:126:"7-cyano-7-deazaguanine synthase (0) (7-cyano-7-carbaguanine synthase) (PreQ(0) synthase) (Queuosine biosynthesis protein QueC)";i:13;s:8:"SAB0661c";i:14;s:6:"Operon";i:15;s:6:"159979";i:16;s:26:"SAB0659c;SAB0660c;SAB0661c";i:17;s:43:"queuosine biosynthetic process [GO:0008616]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_007622.1";i:2;s:27:"Staphylococcus aureus RF122";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"837541-837644";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"837732-838758";i:10;s:1:"+";i:11;s:7:"SAB0768";i:12;s:45:"Methionine import ATP-binding protein MetN 2 ";i:13;s:7:"SAB0768";i:14;s:6:"Operon";i:15;s:6:"159996";i:16;s:23:"SAB0768;SAB0769;SAB0770";i:17;s:33:"methionine transport [GO:0015821]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_007622.1";i:2;s:27:"Staphylococcus aureus RF122";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"886053-886143";i:6;s:1:"+";i:7;s:8:"preQ1-II";i:8;s:0:"";i:9;s:13:"887149-887527";i:10;s:1:"+";i:11;s:7:"SAB0822";i:12;s:0:"";i:13;s:7:"SAB0822";i:14;s:11:"Single gene";i:15;s:7:"1732421";i:16;s:7:"SAB0822";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_007622.1";i:2;s:27:"Staphylococcus aureus RF122";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"962685-962791";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:13:"962866-963670";i:10;s:1:"+";i:11;s:7:"SAB0887";i:12;s:0:"";i:13;s:7:"SAB0887";i:14;s:11:"Single gene";i:15;s:7:"1732445";i:16;s:7:"SAB0887";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_007622.1";i:2;s:27:"Staphylococcus aureus RF122";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1025291-1025391";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1024638-1025214";i:10;s:1:"-";i:11;s:8:"SAB0944c";i:12;s:0:"";i:13;s:8:"SAB0944c";i:14;s:6:"Operon";i:15;s:6:"160028";i:16;s:26:"SAB0942c;SAB0943c;SAB0944c";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_007622.1";i:2;s:27:"Staphylococcus aureus RF122";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1364012-1364187";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1364268-1365474";i:10;s:1:"+";i:11;s:4:"lysC";i:12;s:0:"";i:13;s:7:"SAB1248";i:14;s:6:"Operon";i:15;s:6:"160085";i:16;s:68:"SAB1248(lysC);SAB1249(asd);SAB1250(dapA);SAB1251(dapB);SAB1252(dapD)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_007622.1";i:2;s:27:"Staphylococcus aureus RF122";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1476556-1476690";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1475948-1476494";i:10;s:1:"-";i:11;s:8:"SAB1347c";i:12;s:0:"";i:13;s:8:"SAB1347c";i:14;s:11:"Single gene";i:15;s:7:"1732629";i:16;s:8:"SAB1347c";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_007622.1";i:2;s:27:"Staphylococcus aureus RF122";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1532045-1532142";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1530878-1531970";i:10;s:1:"-";i:11;s:4:"gcvT";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:8:"SAB1409c";i:14;s:6:"Operon";i:15;s:6:"160121";i:16;s:32:"SAB1407c;SAB1408c;SAB1409c(gcvT)";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_007622.1";i:2;s:27:"Staphylococcus aureus RF122";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1661366-1661541";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1659726-1661220";i:10;s:1:"-";i:11;s:4:"lysP";i:12;s:0:"";i:13;s:8:"SAB1541c";i:14;s:11:"Single gene";i:15;s:7:"1732675";i:16;s:14:"SAB1541c(lysP)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_007622.1";i:2;s:27:"Staphylococcus aureus RF122";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1775249-1775384";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1774078-1775122";i:10;s:1:"-";i:11;s:4:"ribD";i:12;s:0:"";i:13;s:8:"SAB1628c";i:14;s:6:"Operon";i:15;s:6:"160164";i:16;s:59:"SAB1625c(ribH);SAB1626c(ribA);SAB1627c(ribE);SAB1628c(ribD)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_007622.1";i:2;s:27:"Staphylococcus aureus RF122";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1790282-1790392";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1788982-1790176";i:10;s:1:"-";i:11;s:8:"SAB1645c";i:12;s:87:"S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)";i:13;s:8:"SAB1645c";i:14;s:11:"Single gene";i:15;s:7:"1732074";i:16;s:8:"SAB1645c";i:17;s:97:"one-carbon metabolic process [GO:0006730]; S-adenosylmethionine biosynthetic process [GO:0006556]";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_007622.1";i:2;s:27:"Staphylococcus aureus RF122";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2114099-2114201";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2113329-2114019";i:10;s:1:"-";i:11;s:4:"tenA";i:12;s:47:"Aminopyrimidine aminohydrolase (Thiaminase II)";i:13;s:8:"SAB1978c";i:14;s:11:"Single gene";i:15;s:7:"1732842";i:16;s:14:"SAB1978c(tenA)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_007622.1";i:2;s:27:"Staphylococcus aureus RF122";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2168012-2168228";i:6;s:1:"-";i:7;s:4:"glmS";i:8;s:0:"";i:9;s:15:"2166004-2167810";i:10;s:1:"-";i:11;s:4:"glmS";i:12;s:0:"";i:13;s:8:"SAB2034c";i:14;s:11:"Single gene";i:15;s:7:"1732870";i:16;s:14:"SAB2034c(glmS)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_007622.1";i:2;s:27:"Staphylococcus aureus RF122";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2333462-2333557";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"2332089-2333451";i:10;s:1:"-";i:11;s:8:"SAB2203c";i:12;s:0:"";i:13;s:8:"SAB2203c";i:14;s:11:"Single gene";i:15;s:7:"1732942";i:16;s:8:"SAB2203c";i:17;s:0:"";i:18;s:15:"View Structure ";}}