About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
225870-225976
(-)
TPP
223903-224908 (-)
BAB1_0218
Mercuric reductase:Flavin-containing monooxygenase FMO:Pyridine nucleotide-disulphide oxidoreductase; class I:TrkA potassium
BAB1_0218
Operon
DOOR ID:
159492
BAB1_0212,
BAB1_0213,
BAB1_0214,
BAB1_0215
(thiE)
,
BAB1_0216
(thiG)
,
BAB1_0217,
BAB1_0218,
BAB1_0219
View Structure
2
336342-336421
(-)
sam-alpha
335054-336251 (-)
metZ
O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase)
BAB1_0335
Single gene
DOOR ID:
1731310
BAB1_0335
(metZ)
View Structure
3
1324184-1324412
(-)
cobalamin
1321311-1322151 (-)
BAB1_1366
Periplasmic binding protein
BAB1_1366
Operon
DOOR ID:
159696
BAB1_1364,
BAB1_1365,
BAB1_1366,
BAB1_1367
View Structure
4
1696227-1696273
(+)
glutamine
1696436-1697873 (-)
pyk
Pyruvate kinase (0)
BAB1_1761
Operon
DOOR ID:
159771
BAB1_1761
(pyk)
,
BAB1_1762
View Structure
5
1703050-1703220
(+)
TPP
1704262-1705894 (+)
thiP
Thiamine transport system permease protein ThiP
BAB1_1771
Operon
DOOR ID:
159773
BAB1_1770
(tbpA)
,
BAB1_1771
(thiP)
,
BAB1_1772
View Structure
Genome:
Brucella melitensis biovar Abortus 2308 chromosome I
(
NC_007618.1
);
Phylum:
Alphaproteobacteria
a:6:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_007618.1";i:2;s:52:"Brucella melitensis biovar Abortus 2308 chromosome I";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"225870-225976";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"223903-224908";i:10;s:1:"-";i:11;s:9:"BAB1_0218";i:12;s:124:"Mercuric reductase:Flavin-containing monooxygenase FMO:Pyridine nucleotide-disulphide oxidoreductase; class I:TrkA potassium";i:13;s:9:"BAB1_0218";i:14;s:6:"Operon";i:15;s:6:"159492";i:16;s:91:"BAB1_0212;BAB1_0213;BAB1_0214;BAB1_0215(thiE);BAB1_0216(thiG);BAB1_0217;BAB1_0218;BAB1_0219";i:17;s:43:"D-amino acid metabolic process [GO:0046416]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_007618.1";i:2;s:52:"Brucella melitensis biovar Abortus 2308 chromosome I";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"336342-336421";i:6;s:1:"-";i:7;s:9:"sam-alpha";i:8;s:0:"";i:9;s:13:"335054-336251";i:10;s:1:"-";i:11;s:4:"metZ";i:12;s:76:"O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase) ";i:13;s:9:"BAB1_0335";i:14;s:11:"Single gene";i:15;s:7:"1731310";i:16;s:15:"BAB1_0335(metZ)";i:17;s:104:"'de novo' L-methionine biosynthetic process [GO:0071266]; homocysteine biosynthetic process [GO:0071268]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_007618.1";i:2;s:52:"Brucella melitensis biovar Abortus 2308 chromosome I";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1324184-1324412";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1321311-1322151";i:10;s:1:"-";i:11;s:9:"BAB1_1366";i:12;s:27:"Periplasmic binding protein";i:13;s:9:"BAB1_1366";i:14;s:6:"Operon";i:15;s:6:"159696";i:16;s:39:"BAB1_1364;BAB1_1365;BAB1_1366;BAB1_1367";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_007618.1";i:2;s:52:"Brucella melitensis biovar Abortus 2308 chromosome I";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1696227-1696273";i:6;s:1:"+";i:7;s:9:"glutamine";i:8;s:0:"";i:9;s:15:"1696436-1697873";i:10;s:1:"-";i:11;s:3:"pyk";i:12;s:19:"Pyruvate kinase (0)";i:13;s:9:"BAB1_1761";i:14;s:6:"Operon";i:15;s:6:"159771";i:16;s:24:"BAB1_1761(pyk);BAB1_1762";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_007618.1";i:2;s:52:"Brucella melitensis biovar Abortus 2308 chromosome I";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1703050-1703220";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1704262-1705894";i:10;s:1:"+";i:11;s:4:"thiP";i:12;s:47:"Thiamine transport system permease protein ThiP";i:13;s:9:"BAB1_1771";i:14;s:6:"Operon";i:15;s:6:"159773";i:16;s:41:"BAB1_1770(tbpA);BAB1_1771(thiP);BAB1_1772";i:17;s:69:"thiamine transport [GO:0015888]; transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}}
