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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
228137-228244
(-)
glycine
227012-228095 (-)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
Nmul_A0214
Operon
DOOR ID:
158918
Nmul_A0211,
Nmul_A0212,
Nmul_A0213,
Nmul_A0214
(gcvT)
View Structure
2
662395-662559
(+)
yybP-ykoY
662570-663152 (+)
Nmul_A0577
Putative Ca2+/H+ antiporter; TMEM165/GDT1 family
Nmul_A0577
Operon
DOOR ID:
159007
Nmul_A0577,
Nmul_A0578
View Structure
3
709017-709254
(+)
cobalamin
709361-711428 (+)
Nmul_A0628
Iron complex outermembrane recepter protein (TonB-dependent receptor)
Nmul_A0628
Single gene
DOOR ID:
1730236
Nmul_A0628
View Structure
4
1087459-1087562
(+)
ykkC-yxkD
1087827-1089342 (+)
Nmul_A0940
Amino acid/polyamine/organocation transporter; APC superfamily
Nmul_A0940
Operon
DOOR ID:
159076
Nmul_A0940,
Nmul_A0941,
Nmul_A0942
View Structure
5
2175465-2175552
(-)
c-di-GMP-I
2173440-2175321 (-)
Nmul_A1888
Peptidase S8 and S53; subtilisin; kexin; sedolisin (Serine protease; subtilisin family)
Nmul_A1888
single gene
DOOR ID:
1730790
Nmul_A1888
View Structure
6
2599508-2599663
(+)
TPP
2599704-2601612 (+)
Nmul_A2285
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Nmul_A2285
Single gene
DOOR ID:
1730960
Nmul_A2285
View Structure
7
2909888-2909965
(-)
SAH
2908431-2909871 (-)
Nmul_A2540
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
Nmul_A2540
Operon
DOOR ID:
159382
Nmul_A2540,
Nmul_A2541
View Structure
8
2965087-2965168
(-)
c-di-GMP-I
2964113-2964998 (-)
Nmul_A2578
Uncharacterized protein
Nmul_A2578
single gene
DOOR ID:
1731091
Nmul_A2578
View Structure
9
3131016-3131108
(+)
c-di-GMP-I
3131151-3132540 (+)
Nmul_A2728
Phosphatase-like protein
Nmul_A2728
single gene
DOOR ID:
1731139
Nmul_A2728
View Structure
Genome:
Nitrosospira multiformis ATCC 25196
(
NC_007614.1
);
Phylum:
Betaproteobacteria
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TMEM165/GDT1 family";i:13;s:10:"Nmul_A0577";i:14;s:6:"Operon";i:15;s:6:"159007";i:16;s:21:"Nmul_A0577;Nmul_A0578";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_007614.1";i:2;s:36:"Nitrosospira multiformis ATCC 25196 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"709017-709254";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"709361-711428";i:10;s:1:"+";i:11;s:10:"Nmul_A0628";i:12;s:69:"Iron complex outermembrane recepter protein (TonB-dependent receptor)";i:13;s:10:"Nmul_A0628";i:14;s:11:"Single gene";i:15;s:7:"1730236";i:16;s:10:"Nmul_A0628";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_007614.1";i:2;s:36:"Nitrosospira multiformis ATCC 25196 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1087459-1087562";i:6;s:1:"+";i:7;s:9:"ykkC-yxkD";i:8;s:0:"";i:9;s:15:"1087827-1089342";i:10;s:1:"+";i:11;s:10:"Nmul_A0940";i:12;s:62:"Amino acid/polyamine/organocation transporter; APC superfamily";i:13;s:10:"Nmul_A0940";i:14;s:6:"Operon";i:15;s:6:"159076";i:16;s:32:"Nmul_A0940;Nmul_A0941;Nmul_A0942";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_007614.1";i:2;s:36:"Nitrosospira multiformis ATCC 25196 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2175465-2175552";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"2173440-2175321";i:10;s:1:"-";i:11;s:10:"Nmul_A1888";i:12;s:87:"Peptidase S8 and S53; subtilisin; kexin; sedolisin (Serine protease; subtilisin family)";i:13;s:10:"Nmul_A1888";i:14;s:11:"single gene";i:15;s:7:"1730790";i:16;s:10:"Nmul_A1888";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_007614.1";i:2;s:36:"Nitrosospira multiformis ATCC 25196 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2599508-2599663";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2599704-2601612";i:10;s:1:"+";i:11;s:10:"Nmul_A2285";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:10:"Nmul_A2285";i:14;s:11:"Single gene";i:15;s:7:"1730960";i:16;s:10:"Nmul_A2285";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_007614.1";i:2;s:36:"Nitrosospira multiformis ATCC 25196 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2909888-2909965";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"2908431-2909871";i:10;s:1:"-";i:11;s:10:"Nmul_A2540";i:12;s:73:"Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)";i:13;s:10:"Nmul_A2540";i:14;s:6:"Operon";i:15;s:6:"159382";i:16;s:21:"Nmul_A2540;Nmul_A2541";i:17;s:96:"one-carbon metabolic process [GO:0006730]; S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_007614.1";i:2;s:36:"Nitrosospira multiformis ATCC 25196 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2965087-2965168";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"2964113-2964998";i:10;s:1:"-";i:11;s:10:"Nmul_A2578";i:12;s:23:"Uncharacterized protein";i:13;s:10:"Nmul_A2578";i:14;s:11:"single gene";i:15;s:7:"1731091";i:16;s:10:"Nmul_A2578";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_007614.1";i:2;s:36:"Nitrosospira multiformis ATCC 25196 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3131016-3131108";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"3131151-3132540";i:10;s:1:"+";i:11;s:10:"Nmul_A2728";i:12;s:24:"Phosphatase-like protein";i:13;s:10:"Nmul_A2728";i:14;s:11:"single gene";i:15;s:7:"1731139";i:16;s:10:"Nmul_A2728";i:17;s:0:"";i:18;s:15:"View Structure ";}}
