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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
63095-63194
(-)
TPP
62080-63064 (-)
tbpA
Thiamin-binding periplasmic protein
SBO_0055
Operon
DOOR ID:
158079
SBO_0053
(thiQ)
,
SBO_0054
(thiP)
,
SBO_0055
(tbpA)
View Structure
2
336937-336985
(+)
mini-ykkC
337009-337321 (+)
Rru_A0272
Rru_A0272
Single gene
DOOR ID:
1735388
Rru_A0272
View Structure
3
682934-683078
(+)
MOCO
684076-684589 (+)
moaB
Molybdenum cofactor biosynthesis protein B
SBO_0669
Operon
DOOR ID:
158190
SBO_0668
(moaA)
,
SBO_0669
(moaB)
,
SBO_0670
(moaC)
,
SBO_0671
(moaD)
,
SBO_0672
(moaE)
View Structure
4
955532-955628
(-)
TPP
954708-955497 (-)
thiM
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
SBO_0925
Operon
DOOR ID:
158241
SBO_0922
(yegW)
,
SBO_0923
(yegX)
,
SBO_0924
(thiD)
,
SBO_0925
(thiM)
View Structure
5
1206778-1206953
(+)
cobalamin
1207093-1207915 (-)
SBO_1209
IS911 ORF2
SBO_1209
Single gene
DOOR ID:
1728747
SBO_1209
View Structure
6
2902537-2902685
(-)
FMN
2901779-2902433 (-)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
SBO_2899
Single gene
DOOR ID:
1729407
SBO_2899
(ribB)
View Structure
7
4054603-4054703
(-)
TPP
4052626-4054522 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
SBO_4015
Operon
DOOR ID:
158802
SBO_4014
(thiE)
,
SBO_4015
(thiC)
View Structure
8
4096196-4096392
(-)
lysine
4094754-4096104 (-)
lysC
Aspartokinase
SBO_4052
Single gene
DOOR ID:
1729818
SBO_4052
(lysC)
View Structure
9
4254868-4254983
(-)
Mg sensor
4252077-4254774 (-)
mgtA
Mg2+ transport ATPase
SBO_4204
Single gene
DOOR ID:
1729890
SBO_4204
(mgtA)
View Structure
Genome:
Shigella boydii Sb227
(
NC_007613.1
);
Phylum:
Gammaproteobacteria
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thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_007613.1";i:2;s:22:"Shigella boydii Sb227 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1206778-1206953";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1207093-1207915";i:10;s:1:"-";i:11;s:8:"SBO_1209";i:12;s:10:"IS911 ORF2";i:13;s:8:"SBO_1209";i:14;s:11:"Single gene";i:15;s:7:"1728747";i:16;s:8:"SBO_1209";i:17;s:56:"DNA integration [GO:0015074]; transposition [GO:0032196]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_007613.1";i:2;s:22:"Shigella boydii Sb227 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2902537-2902685";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"2901779-2902433";i:10;s:1:"-";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:8:"SBO_2899";i:14;s:11:"Single gene";i:15;s:7:"1729407";i:16;s:14:"SBO_2899(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_007613.1";i:2;s:22:"Shigella boydii Sb227 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4054603-4054703";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4052626-4054522";i:10;s:1:"-";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:8:"SBO_4015";i:14;s:6:"Operon";i:15;s:6:"158802";i:16;s:29:"SBO_4014(thiE);SBO_4015(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_007613.1";i:2;s:22:"Shigella boydii Sb227 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4096196-4096392";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"4094754-4096104";i:10;s:1:"-";i:11;s:4:"lysC";i:12;s:14:"Aspartokinase ";i:13;s:8:"SBO_4052";i:14;s:11:"Single gene";i:15;s:7:"1729818";i:16;s:14:"SBO_4052(lysC)";i:17;s:105:"lysine biosynthetic process via diaminopimelate [GO:0009089]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_007613.1";i:2;s:22:"Shigella boydii Sb227 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4254868-4254983";i:6;s:1:"-";i:7;s:9:"Mg sensor";i:8;s:0:"";i:9;s:15:"4252077-4254774";i:10;s:1:"-";i:11;s:4:"mgtA";i:12;s:21:"Mg2+ transport ATPase";i:13;s:8:"SBO_4204";i:14;s:11:"Single gene";i:15;s:7:"1729890";i:16;s:14:"SBO_4204(mgtA)";i:17;s:0:"";i:18;s:15:"View Structure ";}}
