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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
95980-96079
(-)
TPP
94965-95949 (-)
tbpA
Thiamin-binding periplasmic protein
SDY_0095
Operon
DOOR ID:
157114
SDY_0093
(thiQ)
,
SDY_0094
(thiP)
,
SDY_0095
(tbpA)
View Structure
2
768693-768837
(-)
MOCO
767181-767694 (-)
moaB
Molybdenum cofactor biosynthesis protein B
SDY_0824
Operon
DOOR ID:
157270
SDY_0821
(moaE)
,
SDY_0822
(moaD)
,
SDY_0823
(moaC)
,
SDY_0824
(moaB)
,
SDY_0825
(moaA)
View Structure
3
1410478-1410525
(+)
mini-ykkC
1411003-1411756 (-)
amb1291
amb1291
Single gene
DOOR ID:
1733964
amb1291
View Structure
4
1789337-1789438
(+)
yybP-ykoY
1789514-1790135 (+)
SDY_1967
Probable manganese efflux pump MntP
SDY_1967
Single gene
DOOR ID:
1727046
SDY_1967
View Structure
5
2073271-2073367
(-)
TPP
2072447-2073236 (-)
thiM
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
SDY_2278
Operon
DOOR ID:
157520
SDY_2274
(yegW)
,
SDY_2275
(yegX)
,
SDY_2276,
SDY_2277
(thiD)
,
SDY_2278
(thiM)
View Structure
6
2989885-2990033
(-)
FMN
2989127-2989781 (-)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
SDY_3226
Single gene
DOOR ID:
1727503
SDY_3226
(ribB)
View Structure
7
3461625-3461725
(+)
TPP
3461805-3463701 (+)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
SDY_3732
Operon
DOOR ID:
157816
SDY_3732
(thiC)
,
SDY_3733
(thiE)
,
SDY_3734
(thiF)
,
SDY_3735
(thiS)
,
SDY_3736
(thiG)
,
SDY_3737
(thiH)
View Structure
8
3494832-3495022
(-)
cobalamin
3492922-3494767 (-)
btuB
Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
SDY_3762
Operon
DOOR ID:
157821
SDY_3761
(murI)
,
SDY_3762
(btuB)
View Structure
9
3959792-3959988
(+)
lysine
3960079-3961429 (+)
lysC
Aspartokinase
SDY_4227
Single gene
DOOR ID:
1727825
SDY_4227
(lysC)
View Structure
10
3992977-3993092
(+)
Mg sensor
3993185-3995882 (+)
mgtA
Mg2+ transport ATPase; P-type 1
SDY_4261
Single gene
DOOR ID:
1727841
SDY_4261
(mgtA)
View Structure
Genome:
Shigella dysenteriae Sd197
(
NC_007606.1
);
Phylum:
Gammaproteobacteria
a:11:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_007606.1";i:2;s:27:"Shigella dysenteriae Sd197 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:11:"95980-96079";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:11:"94965-95949";i:10;s:1:"-";i:11;s:4:"tbpA";i:12;s:35:"Thiamin-binding periplasmic protein";i:13;s:8:"SDY_0095";i:14;s:6:"Operon";i:15;s:6:"157114";i:16;s:44:"SDY_0093(thiQ);SDY_0094(thiP);SDY_0095(tbpA)";i:17;s:69:"thiamine transport [GO:0015888]; transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_007606.1";i:2;s:27:"Shigella dysenteriae Sd197 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"768693-768837";i:6;s:1:"-";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:13:"767181-767694";i:10;s:1:"-";i:11;s:4:"moaB";i:12;s:42:"Molybdenum cofactor biosynthesis protein B";i:13;s:8:"SDY_0824";i:14;s:6:"Operon";i:15;s:6:"157270";i:16;s:74:"SDY_0821(moaE);SDY_0822(moaD);SDY_0823(moaC);SDY_0824(moaB);SDY_0825(moaA)";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_007606.1";i:2;s:27:"Shigella dysenteriae Sd197 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1410478-1410525";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"1411003-1411756";i:10;s:1:"-";i:11;s:7:"amb1291";i:12;s:0:"";i:13;s:7:"amb1291";i:14;s:11:"Single gene";i:15;s:7:"1733964";i:16;s:7:"amb1291";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_007606.1";i:2;s:27:"Shigella dysenteriae Sd197 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1789337-1789438";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1789514-1790135";i:10;s:1:"+";i:11;s:8:"SDY_1967";i:12;s:35:"Probable manganese efflux pump MntP";i:13;s:8:"SDY_1967";i:14;s:11:"Single gene";i:15;s:7:"1727046";i:16;s:8:"SDY_1967";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_007606.1";i:2;s:27:"Shigella dysenteriae Sd197 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2073271-2073367";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2072447-2073236";i:10;s:1:"-";i:11;s:4:"thiM";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:8:"SDY_2278";i:14;s:6:"Operon";i:15;s:6:"157520";i:16;s:68:"SDY_2274(yegW);SDY_2275(yegX);SDY_2276;SDY_2277(thiD);SDY_2278(thiM)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_007606.1";i:2;s:27:"Shigella dysenteriae Sd197 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2989885-2990033";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"2989127-2989781";i:10;s:1:"-";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:8:"SDY_3226";i:14;s:11:"Single gene";i:15;s:7:"1727503";i:16;s:14:"SDY_3226(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_007606.1";i:2;s:27:"Shigella dysenteriae Sd197 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3461625-3461725";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3461805-3463701";i:10;s:1:"+";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:8:"SDY_3732";i:14;s:6:"Operon";i:15;s:6:"157816";i:16;s:89:"SDY_3732(thiC);SDY_3733(thiE);SDY_3734(thiF);SDY_3735(thiS);SDY_3736(thiG);SDY_3737(thiH)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_007606.1";i:2;s:27:"Shigella dysenteriae Sd197 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3494832-3495022";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3492922-3494767";i:10;s:1:"-";i:11;s:4:"btuB";i:12;s:89:"Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)";i:13;s:8:"SDY_3762";i:14;s:6:"Operon";i:15;s:6:"157821";i:16;s:29:"SDY_3761(murI);SDY_3762(btuB)";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_007606.1";i:2;s:27:"Shigella dysenteriae Sd197 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3959792-3959988";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"3960079-3961429";i:10;s:1:"+";i:11;s:4:"lysC";i:12;s:14:"Aspartokinase ";i:13;s:8:"SDY_4227";i:14;s:11:"Single gene";i:15;s:7:"1727825";i:16;s:14:"SDY_4227(lysC)";i:17;s:105:"lysine biosynthetic process via diaminopimelate [GO:0009089]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_007606.1";i:2;s:27:"Shigella dysenteriae Sd197 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3992977-3993092";i:6;s:1:"+";i:7;s:9:"Mg sensor";i:8;s:0:"";i:9;s:15:"3993185-3995882";i:10;s:1:"+";i:11;s:4:"mgtA";i:12;s:31:"Mg2+ transport ATPase; P-type 1";i:13;s:8:"SDY_4261";i:14;s:11:"Single gene";i:15;s:7:"1727841";i:16;s:14:"SDY_4261(mgtA)";i:17;s:0:"";i:18;s:15:"View Structure ";}}