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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
1114842-1114939
(-)
TPP
1113353-1114724 (-)
Synpcc7942_1096
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Synpcc7942_1096
Single gene
DOOR ID:
1725482
Synpcc7942_1096
View Structure
2
1413974-1414116
(-)
AdoCbl
1409559-1413132 (+)
Synpcc7942_1372
Methionine synthase (3) (5-methyltetrahydrofolate--homocysteine methyltransferase)
Synpcc7942_1372
Single gene
DOOR ID:
1725603
Synpcc7942_1372
View Structure
3
1414003-1414147
(-)
cobalamin
1413286-1413982 (-)
Synpcc7942_1373
Hydrogenase accessory protein
Synpcc7942_1373
Single gene
DOOR ID:
1725604
Synpcc7942_1373
View Structure
4
1919127-1919315
(+)
cobalamin
1919363-1920827 (+)
Synpcc7942_1851
Ferredoxin--nitrite reductase
Synpcc7942_1851
Operon
DOOR ID:
156921
Synpcc7942_1851,
Synpcc7942_1852
(cobH)
,
Synpcc7942_1853,
Synpcc7942_1854,
Synpcc7942_1855,
Synpcc7942_1856
View Structure
5
2263916-2263989
(+)
fluoride
2264072-2265710 (+)
Synpcc7942_2186
Probable Na+/H+-exchanging protein
Synpcc7942_2186
Single gene
DOOR ID:
1725986
Synpcc7942_2186
View Structure
6
2611074-2611130
(-)
glutamine
2610752-2611037 (-)
Synpcc7942_2529
Synpcc7942_2529
Single gene
DOOR ID:
1726111
Synpcc7942_2529
View Structure
Genome:
Synechococcus elongatus PCC 7942
(
NC_007604.1
);
Phylum:
Cyanobacteria/Melainabacteria group
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