About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
54641-54746
(-)
TPP
53759-54586 (-)
thiM
LSA0059
Operon
DOOR ID:
155753
LSA0055,
LSA0057
(thiE)
,
LSA0058
(thiD)
,
LSA0059
(thiM)
View Structure
2
348923-349021
(+)
THF
349042-349646 (+)
LSA0348
LSA0348
Single gene
DOOR ID:
1723747
LSA0348
View Structure
3
485164-485249
(+)
SMK_box
486523-488026 (+)
LSA0469
LSA0469
Operon
DOOR ID:
155847
LSA0468
(metK)
,
LSA0469
View Structure
4
819357-819401
(-)
PreQ1
818363-819357 (-)
iunH3
LSA0830
Operon
DOOR ID:
155924
LSA0829,
LSA0830
(iunH3)
View Structure
5
957374-957472
(+)
TPP
957504-958123 (+)
LSA0968
LSA0968
Single gene
DOOR ID:
1723945
LSA0968
View Structure
6
1013979-1014114
(-)
FMN
1013247-1013873 (-)
LSA1023
LSA1023
Single gene
DOOR ID:
1723965
LSA1023
View Structure
7
1082189-1082354
(-)
ykoK
1081222-1081984 (-)
LSA1086
LSA1086
Single gene
DOOR ID:
1723986
LSA1086
View Structure
8
1091604-1091693
(-)
TPP
1090807-1091506 (-)
LSA1095
LSA1095
Operon
DOOR ID:
155980
LSA1094,
LSA1095
View Structure
9
1597983-1598027
(-)
PreQ1
1596705-1597445 (+)
LSA1609
LSA1609
Single gene
DOOR ID:
1724162
LSA1609
View Structure
10
1809887-1810064
(-)
lysine
1808286-1809786 (-)
lysP
LSA1817
Single gene
DOOR ID:
1724238
LSA1817
(lysP)
View Structure
Genome:
Lactobacillus sakei subsp. sakei 23K
(
NC_007576.1
);
Phylum:
Firmicutes
a:11:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_007576.1";i:2;s:37:"Lactobacillus sakei subsp. sakei 23K ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:11:"54641-54746";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:11:"53759-54586";i:10;s:1:"-";i:11;s:4:"thiM";i:12;s:0:"";i:13;s:7:"LSA0059";i:14;s:6:"Operon";i:15;s:6:"155753";i:16;s:49:"LSA0055;LSA0057(thiE);LSA0058(thiD);LSA0059(thiM)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_007576.1";i:2;s:37:"Lactobacillus sakei subsp. sakei 23K ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"348923-349021";i:6;s:1:"+";i:7;s:3:"THF";i:8;s:0:"";i:9;s:13:"349042-349646";i:10;s:1:"+";i:11;s:7:"LSA0348";i:12;s:0:"";i:13;s:7:"LSA0348";i:14;s:11:"Single gene";i:15;s:7:"1723747";i:16;s:7:"LSA0348";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_007576.1";i:2;s:37:"Lactobacillus sakei subsp. sakei 23K ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"485164-485249";i:6;s:1:"+";i:7;s:7:"SMK_box";i:8;s:0:"";i:9;s:13:"486523-488026";i:10;s:1:"+";i:11;s:7:"LSA0469";i:12;s:0:"";i:13;s:7:"LSA0469";i:14;s:6:"Operon";i:15;s:6:"155847";i:16;s:21:"LSA0468(metK);LSA0469";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_007576.1";i:2;s:37:"Lactobacillus sakei subsp. sakei 23K ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"819357-819401";i:6;s:1:"-";i:7;s:5:"PreQ1";i:8;s:0:"";i:9;s:13:"818363-819357";i:10;s:1:"-";i:11;s:5:"iunH3";i:12;s:0:"";i:13;s:7:"LSA0830";i:14;s:6:"Operon";i:15;s:6:"155924";i:16;s:22:"LSA0829;LSA0830(iunH3)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_007576.1";i:2;s:37:"Lactobacillus sakei subsp. sakei 23K ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"957374-957472";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"957504-958123";i:10;s:1:"+";i:11;s:7:"LSA0968";i:12;s:0:"";i:13;s:7:"LSA0968";i:14;s:11:"Single gene";i:15;s:7:"1723945";i:16;s:7:"LSA0968";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_007576.1";i:2;s:37:"Lactobacillus sakei subsp. sakei 23K ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1013979-1014114";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1013247-1013873";i:10;s:1:"-";i:11;s:7:"LSA1023";i:12;s:0:"";i:13;s:7:"LSA1023";i:14;s:11:"Single gene";i:15;s:7:"1723965";i:16;s:7:"LSA1023";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_007576.1";i:2;s:37:"Lactobacillus sakei subsp. sakei 23K ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1082189-1082354";i:6;s:1:"-";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"1081222-1081984";i:10;s:1:"-";i:11;s:7:"LSA1086";i:12;s:0:"";i:13;s:7:"LSA1086";i:14;s:11:"Single gene";i:15;s:7:"1723986";i:16;s:7:"LSA1086";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_007576.1";i:2;s:37:"Lactobacillus sakei subsp. sakei 23K ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1091604-1091693";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1090807-1091506";i:10;s:1:"-";i:11;s:7:"LSA1095";i:12;s:0:"";i:13;s:7:"LSA1095";i:14;s:6:"Operon";i:15;s:6:"155980";i:16;s:15:"LSA1094;LSA1095";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_007576.1";i:2;s:37:"Lactobacillus sakei subsp. sakei 23K ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1597983-1598027";i:6;s:1:"-";i:7;s:5:"PreQ1";i:8;s:0:"";i:9;s:15:"1596705-1597445";i:10;s:1:"+";i:11;s:7:"LSA1609";i:12;s:0:"";i:13;s:7:"LSA1609";i:14;s:11:"Single gene";i:15;s:7:"1724162";i:16;s:7:"LSA1609";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_007576.1";i:2;s:37:"Lactobacillus sakei subsp. sakei 23K ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1809887-1810064";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1808286-1809786";i:10;s:1:"-";i:11;s:4:"lysP";i:12;s:0:"";i:13;s:7:"LSA1817";i:14;s:11:"Single gene";i:15;s:7:"1724238";i:16;s:13:"LSA1817(lysP)";i:17;s:0:"";i:18;s:15:"View Structure ";}}