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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
841128-841197
(+)
c-di-GMP-I
841230-842778 (+)
Dde_0820
Putative two component; sigma54 specific; transcriptional regulator
Dde_0820
single gene
DOOR ID:
1719117
Dde_0820
View Structure
2
1078058-1078221
(+)
FMN
1078351-1079011 (+)
Dde_1050
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
Dde_1050
Single gene
DOOR ID:
1719162
Dde_1050
View Structure
3
1573919-1574022
(+)
TPP
1574328-1574529 (+)
Dde_1554
Thiamine biosynthesis protein ThiS
Dde_1554
Operon
DOOR ID:
153460
Dde_1554,
Dde_1555,
Dde_1556,
Dde_1557,
Dde_1558
View Structure
4
1574080-1574186
(+)
TPP
1574328-1574529 (+)
Dde_1554
Thiamine biosynthesis protein ThiS
Dde_1554
Operon
DOOR ID:
153460
Dde_1554,
Dde_1555,
Dde_1556,
Dde_1557,
Dde_1558
View Structure
5
2347802-2347981
(-)
cobalamin
2345408-2347685 (-)
Dde_2328
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)
Dde_2328
Single gene
DOOR ID:
1719519
Dde_2328
View Structure
6
2490976-2491083
(+)
SAM
2491267-2491540 (+)
Dde_2470
Dde_2470
Single gene
DOOR ID:
1719574
Dde_2470
View Structure
7
2838359-2838468
(+)
glycine
2838611-2840003 (+)
Dde_2852
Amino acid carrier protein
Dde_2852
Single gene
DOOR ID:
1719704
Dde_2852
View Structure
8
3093545-3093727
(+)
cobalamin
3093861-3094752 (+)
Dde_3103
Sirohydrochlorin cobaltochelatase
Dde_3103
Operon
DOOR ID:
153732
Dde_3103,
Dde_3104,
Dde_3105,
Dde_3106,
Dde_3107
View Structure
Genome:
Desulfovibrio alaskensis G20
(
NC_007519.1
);
Phylum:
delta/epsilon subdivisions
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