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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
158170-158246
(+)
c-di-GMP-I
158319-158961 (+)
Gmet_0131
Uncharacterized protein
Gmet_0131
single gene
DOOR ID:
1717633
Gmet_0131
View Structure
2
264989-265065
(-)
c-di-GMP-I
264084-264930 (-)
Gmet_0232
Uncharacterized protein
Gmet_0232
single gene
DOOR ID:
1717674
Gmet_0232
View Structure
3
271418-271494
(-)
c-di-GMP-I
270397-271348 (-)
Gmet_0241
Lipoprotein; putative
Gmet_0241
single gene
DOOR ID:
1717679
Gmet_0241
View Structure
4
325755-325831
(+)
c-di-GMP-I
326002-328753 (+)
Gmet_0292
Cytochrome c
Gmet_0292
single gene
DOOR ID:
1717694
Gmet_0292
View Structure
5
513460-513665
(+)
cobalamin
513756-514275 (+)
cobU
Bifunctional adenosylcobalamin biosynthesis protein (2)
Gmet_0466
Operon
DOOR ID:
152528
Gmet_0466,
Gmet_0467
(cobT)
,
Gmet_0468,
Gmet_0469
View Structure
6
765280-765385
(+)
SAM
765465-766641 (+)
metC-1
Cystathionine gamma-synthase/beta-lyase
Gmet_0698
Operon
DOOR ID:
152579
Gmet_0698,
Gmet_0699
View Structure
7
824354-824437
(-)
c-di-GMP-I
822513-824277 (-)
Gmet_0749
Serine protease; subtilase family
Gmet_0749
single gene
DOOR ID:
1717797
Gmet_0749
View Structure
8
827209-827292
(-)
c-di-GMP-I
825368-827132 (-)
Gmet_0751
Serine protease; subtilase family
Gmet_0751
single gene
DOOR ID:
1717799
Gmet_0751
View Structure
9
1079465-1079541
(+)
c-di-GMP-I
1079805-1080006 (+)
Gmet_0970
Helix-turn-helix transcriptional regulator; XRE family
Gmet_0970
single gene
DOOR ID:
1717867
Gmet_0970
View Structure
10
1157809-1157929
(-)
MOCO
1156443-1157688 (-)
Gmet_1042
Phosphate-selective outer membrane channel
Gmet_1042
Single gene
DOOR ID:
1717895
Gmet_1042
View Structure
11
1160942-1161059
(-)
MOCO
1159180-1160911 (-)
aorA
Aldehyde:ferredoxin oxidoreductase; tungsten-containing
Gmet_1045
Single gene
DOOR ID:
1717896
Gmet_1045
View Structure
12
1211973-1212049
(-)
c-di-GMP-I
1211374-1211821 (-)
Gmet_1087
Cytochrome c
Gmet_1087
single gene
DOOR ID:
1717910
Gmet_1087
View Structure
13
1212153-1212229
(-)
c-di-GMP-I
1211374-1211821 (-)
Gmet_1087
Cytochrome c
Gmet_1087
single gene
DOOR ID:
1717910
Gmet_1087
View Structure
14
1324402-1324478
(-)
c-di-GMP-I
1323600-1324155 (-)
Gmet_1191
Cytochrome c
Gmet_1191
single gene
DOOR ID:
1717943
Gmet_1191
View Structure
15
1324541-1324617
(-)
c-di-GMP-I
1323600-1324155 (-)
Gmet_1191
Cytochrome c
Gmet_1191
single gene
DOOR ID:
1717943
Gmet_1191
View Structure
16
1334239-1334315
(+)
c-di-GMP-I
1334408-1335968 (+)
Gmet_1195
Serine protease; subtilase family
Gmet_1195
single gene
DOOR ID:
1717944
Gmet_1195
View Structure
17
1623688-1623888
(-)
c-di-GMP-I
1622863-1623601 (-)
Gmet_1452
Uncharacterized protein
Gmet_1452
single gene
DOOR ID:
1718012
Gmet_1452
View Structure
18
1911272-1911348
(+)
c-di-GMP-I
1911406-1912870 (+)
Gmet_1703
Cytochrome c
Gmet_1703
single gene
DOOR ID:
1718069
Gmet_1703
View Structure
19
1977793-1977869
(+)
c-di-GMP-I
1977966-1978518 (+)
Gmet_1763
Uncharacterized protein
Gmet_1763
single gene
DOOR ID:
1718089
Gmet_1763
View Structure
20
2280692-2280768
(+)
c-di-GMP-I
2280860-2281673 (+)
Gmet_2037
N-acylhomoserine lactone synthetase-related protein
Gmet_2037
single gene
DOOR ID:
1718147
Gmet_2037
View Structure
21
2447619-2447695
(+)
c-di-GMP-I
2447852-2449457 (+)
Gmet_2168
Cytochrome c
Gmet_2168
single gene
DOOR ID:
1718185
Gmet_2168
View Structure
22
3145553-3145682
(+)
SAM
3145777-3146887 (+)
metX
Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)
Gmet_2783
Operon
DOOR ID:
153023
Gmet_2782,
Gmet_2783,
Gmet_2784
View Structure
23
3292802-3292904
(+)
TPP
3292966-3294460 (+)
thiE%2FthiD
Thiamine-phosphate synthase (TP synthase) (TPS) (Thiamine-phosphate pyrophosphorylase) (TMP pyrophosphorylase) (TMP-PPase)
Gmet_2909
Single gene
DOOR ID:
1718432
Gmet_2909
View Structure
24
3319593-3319698
(+)
TPP
3319791-3319989 (+)
thiS-1
Thiamin biosynthesis sulfur carrier protein
Gmet_2933
Operon
DOOR ID:
153054
Gmet_2933,
Gmet_2934
(thiG)
,
Gmet_2935,
Gmet_2936
View Structure
25
3913064-3913140
(+)
c-di-GMP-I
3913431-3914748 (+)
Gmet_3485
Peptidoglycan L;D-transpeptidase lipoprotein; YkuD family; SPOR domain-containing
Gmet_3485
single gene
DOOR ID:
1718610
Gmet_3485
View Structure
26
3913272-3913348
(+)
c-di-GMP-I
3913431-3914748 (+)
Gmet_3485
Peptidoglycan L;D-transpeptidase lipoprotein; YkuD family; SPOR domain-containing
Gmet_3485
single gene
DOOR ID:
1718610
Gmet_3485
View Structure
Genome:
Geobacter metallireducens GS-15
(
NC_007517.1
);
Phylum:
delta/epsilon subdivisions
a:27:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_007517.1";i:2;s:32:"Geobacter metallireducens GS-15 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:13:"158170-158246";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:13:"158319-158961";i:10;s:1:"+";i:11;s:9:"Gmet_0131";i:12;s:23:"Uncharacterized protein";i:13;s:9:"Gmet_0131";i:14;s:11:"single gene";i:15;s:7:"1717633";i:16;s:9:"Gmet_0131";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_007517.1";i:2;s:32:"Geobacter metallireducens GS-15 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:13:"264989-265065";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:13:"264084-264930";i:10;s:1:"-";i:11;s:9:"Gmet_0232";i:12;s:23:"Uncharacterized protein";i:13;s:9:"Gmet_0232";i:14;s:11:"single gene";i:15;s:7:"1717674";i:16;s:9:"Gmet_0232";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_007517.1";i:2;s:32:"Geobacter metallireducens GS-15 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:13:"271418-271494";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:13:"270397-271348";i:10;s:1:"-";i:11;s:9:"Gmet_0241";i:12;s:21:"Lipoprotein; 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