About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
171925-172030
(+)
TPP
172075-173476 (+)
Syncc9902_0167
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Syncc9902_0167
Single gene
DOOR ID:
1714958
Syncc9902_0167
View Structure
2
1915015-1915162
(+)
cobalamin
1915171-1915804 (+)
Syncc9902_2011
Putative hydrogenase accessory protein
Syncc9902_2011
Single gene
DOOR ID:
1715675
Syncc9902_2011
View Structure
Genome:
Synechococcus sp. CC9902
(
NC_007513.1
);
Phylum:
Cyanobacteria/Melainabacteria group
a:3:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_007513.1";i:2;s:25:"Synechococcus sp. CC9902 ";i:3;s:35:"Cyanobacteria/Melainabacteria group";i:4;s:7:"1798711";i:5;s:13:"171925-172030";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"172075-173476";i:10;s:1:"+";i:11;s:14:"Syncc9902_0167";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:14:"Syncc9902_0167";i:14;s:11:"Single gene";i:15;s:7:"1714958";i:16;s:14:"Syncc9902_0167";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_007513.1";i:2;s:25:"Synechococcus sp. CC9902 ";i:3;s:35:"Cyanobacteria/Melainabacteria group";i:4;s:7:"1798711";i:5;s:15:"1915015-1915162";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1915171-1915804";i:10;s:1:"+";i:11;s:14:"Syncc9902_2011";i:12;s:38:"Putative hydrogenase accessory protein";i:13;s:14:"Syncc9902_2011";i:14;s:11:"Single gene";i:15;s:7:"1715675";i:16;s:14:"Syncc9902_2011";i:17;s:0:"";i:18;s:15:"View Structure ";}}
