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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
391488-391630
(+)
cobalamin
391662-391872 (+)
Bcep18194_B0359
Bcep18194_B0359
Operon
DOOR ID:
149965
Bcep18194_B0359,
Bcep18194_B0360
View Structure
2
1678270-1678463
(-)
cobalamin
1676002-1678210 (-)
Bcep18194_B1485
TonB-dependent receptor
Bcep18194_B1485
Single gene
DOOR ID:
1713428
Bcep18194_B1485
View Structure
3
1720041-1720197
(+)
FMN
1720263-1720773 (+)
Bcep18194_B1525
6;7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (LS) (Lumazine synthase) (8)
Bcep18194_B1525
Single gene
DOOR ID:
1713450
Bcep18194_B1525
View Structure
4
2629206-2629309
(-)
fluoride
2627884-2629126 (-)
Bcep18194_B2302
Cl-channel; voltage gated
Bcep18194_B2302
Operon
DOOR ID:
150316
Bcep18194_B2301,
Bcep18194_B2302
View Structure
5
3138438-3138601
(+)
yybP-ykoY
3138686-3139697 (+)
Bcep18194_B2770
Sodium/calcium exchanger membrane region
Bcep18194_B2770
Single gene
DOOR ID:
1714020
Bcep18194_B2770
View Structure
Genome:
Burkholderia sp. 383 chromosome II
(
NC_007511.1
);
Phylum:
Betaproteobacteria
a:6:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_007511.1";i:2;s:34:"Burkholderia sp. 383 chromosome II";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"391488-391630";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"391662-391872";i:10;s:1:"+";i:11;s:15:"Bcep18194_B0359";i:12;s:0:"";i:13;s:15:"Bcep18194_B0359";i:14;s:6:"Operon";i:15;s:6:"149965";i:16;s:31:"Bcep18194_B0359;Bcep18194_B0360";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_007511.1";i:2;s:34:"Burkholderia sp. 383 chromosome II";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1678270-1678463";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1676002-1678210";i:10;s:1:"-";i:11;s:15:"Bcep18194_B1485";i:12;s:23:"TonB-dependent receptor";i:13;s:15:"Bcep18194_B1485";i:14;s:11:"Single gene";i:15;s:7:"1713428";i:16;s:15:"Bcep18194_B1485";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_007511.1";i:2;s:34:"Burkholderia sp. 383 chromosome II";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1720041-1720197";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1720263-1720773";i:10;s:1:"+";i:11;s:15:"Bcep18194_B1525";i:12;s:84:"6;7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (LS) (Lumazine synthase) (8)";i:13;s:15:"Bcep18194_B1525";i:14;s:11:"Single gene";i:15;s:7:"1713450";i:16;s:15:"Bcep18194_B1525";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_007511.1";i:2;s:34:"Burkholderia sp. 383 chromosome II";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2629206-2629309";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"2627884-2629126";i:10;s:1:"-";i:11;s:15:"Bcep18194_B2302";i:12;s:25:"Cl-channel; voltage gated";i:13;s:15:"Bcep18194_B2302";i:14;s:6:"Operon";i:15;s:6:"150316";i:16;s:31:"Bcep18194_B2301;Bcep18194_B2302";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_007511.1";i:2;s:34:"Burkholderia sp. 383 chromosome II";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3138438-3138601";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"3138686-3139697";i:10;s:1:"+";i:11;s:15:"Bcep18194_B2770";i:12;s:40:"Sodium/calcium exchanger membrane region";i:13;s:15:"Bcep18194_B2770";i:14;s:11:"Single gene";i:15;s:7:"1714020";i:16;s:15:"Bcep18194_B2770";i:17;s:36:"transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}}