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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
173595-173728
(-)
glycine
172391-173510 (-)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
Bcep18194_A3325
Operon
DOOR ID:
149237
Bcep18194_A3323,
Bcep18194_A3324,
Bcep18194_A3325
(gcvT)
View Structure
2
173762-173865
(-)
glycine
172391-173510 (-)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
Bcep18194_A3325
Operon
DOOR ID:
149237
Bcep18194_A3323,
Bcep18194_A3324,
Bcep18194_A3325
(gcvT)
View Structure
3
233788-233904
(+)
SAH
233936-235355 (+)
Bcep18194_A3375
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
Bcep18194_A3375
Single gene
DOOR ID:
1711552
Bcep18194_A3375
View Structure
4
377403-377526
(+)
TPP
377751-378888 (+)
Bcep18194_A3508
Glycine oxidase (9)
Bcep18194_A3508
Operon
DOOR ID:
149272
Bcep18194_A3508,
Bcep18194_A3509,
Bcep18194_A3510
(thiG)
,
Bcep18194_A3511
View Structure
5
810912-811012
(+)
ZMP-ZTP
811149-812397 (+)
glyA
Serine hydroxymethyltransferase 3 (SHMT 3) (Serine methylase 3)
Bcep18194_A3895
Operon
DOOR ID:
149354
Bcep18194_A3895
(glyA)
,
Bcep18194_A3896
(nrdR)
View Structure
6
1059690-1059827
(-)
yybP-ykoY
1058285-1058984 (+)
Bcep18194_A4127
Bcep18194_A4127
Single gene
DOOR ID:
1711797
Bcep18194_A4127
View Structure
7
1285154-1285270
(-)
TPP
1283097-1285029 (-)
Bcep18194_A4331
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Bcep18194_A4331
Single gene
DOOR ID:
1711870
Bcep18194_A4331
View Structure
8
1816304-1816541
(-)
cobalamin
1815384-1816134 (-)
Bcep18194_A4802
Uroporphyrinogen-III C-methyltransferase (07)
Bcep18194_A4802
Operon
DOOR ID:
149542
Bcep18194_A4799,
Bcep18194_A4800,
Bcep18194_A4801,
Bcep18194_A4802
View Structure
9
1818666-1818932
(+)
cobalamin
1819261-1820350 (+)
Bcep18194_A4805
Cobalamin synthesis protein/P47K
Bcep18194_A4805
Operon
DOOR ID:
149544
Bcep18194_A4805,
Bcep18194_A4806
(cobN)
,
Bcep18194_A4807,
Bcep18194_A4808,
Bcep18194_A4809
View Structure
10
1841871-1842062
(-)
cobalamin
1840399-1841836 (-)
Bcep18194_A4824
Nitrite/sulfite reductase; hemoprotein beta subunit
Bcep18194_A4824
Operon
DOOR ID:
149547
Bcep18194_A4821,
Bcep18194_A4822,
Bcep18194_A4823
(cobH)
,
Bcep18194_A4824
View Structure
11
2902037-2902288
(-)
cobalamin
2900879-2901878 (-)
Bcep18194_A5786
ABC cobalamin/Fe3+-siderophore transporter; inner membrane subunit
Bcep18194_A5786
Operon
DOOR ID:
149745
Bcep18194_A5782,
Bcep18194_A5783
(cobS)
,
Bcep18194_A5784
(cobT)
,
Bcep18194_A5785,
Bcep18194_A5786
View Structure
12
3151572-3151720
(-)
FMN
3150742-3151453 (-)
Bcep18194_A6016
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
Bcep18194_A6016
Single gene
DOOR ID:
1712550
Bcep18194_A6016
View Structure
13
4357234-4357280
(-)
mini-ykkC
4356368-4356902 (+)
blc
SBO_4307
Operon
DOOR ID:
158844
SBO_4302
(frdA)
,
SBO_4303
(frdB)
,
SBO_4304
(frdC)
,
SBO_4305
(frdD)
,
SBO_4306
(ampC)
,
SBO_4307
(blc)
View Structure
Genome:
Burkholderia sp. 383 chromosome I
(
NC_007510.1
);
Phylum:
Betaproteobacteria
a:14:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_007510.1";i:2;s:33:"Burkholderia sp. 383 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"173595-173728";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:13:"172391-173510";i:10;s:1:"-";i:11;s:4:"gcvT";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:15:"Bcep18194_A3325";i:14;s:6:"Operon";i:15;s:6:"149237";i:16;s:53:"Bcep18194_A3323;Bcep18194_A3324;Bcep18194_A3325(gcvT)";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_007510.1";i:2;s:33:"Burkholderia sp. 383 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"173762-173865";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:13:"172391-173510";i:10;s:1:"-";i:11;s:4:"gcvT";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:15:"Bcep18194_A3325";i:14;s:6:"Operon";i:15;s:6:"149237";i:16;s:53:"Bcep18194_A3323;Bcep18194_A3324;Bcep18194_A3325(gcvT)";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_007510.1";i:2;s:33:"Burkholderia sp. 383 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"233788-233904";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:13:"233936-235355";i:10;s:1:"+";i:11;s:15:"Bcep18194_A3375";i:12;s:73:"Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)";i:13;s:15:"Bcep18194_A3375";i:14;s:11:"Single gene";i:15;s:7:"1711552";i:16;s:15:"Bcep18194_A3375";i:17;s:96:"one-carbon metabolic process [GO:0006730]; S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_007510.1";i:2;s:33:"Burkholderia sp. 383 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"377403-377526";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"377751-378888";i:10;s:1:"+";i:11;s:15:"Bcep18194_A3508";i:12;s:19:"Glycine oxidase (9)";i:13;s:15:"Bcep18194_A3508";i:14;s:6:"Operon";i:15;s:6:"149272";i:16;s:69:"Bcep18194_A3508;Bcep18194_A3509;Bcep18194_A3510(thiG);Bcep18194_A3511";i:17;s:43:"D-amino acid metabolic process [GO:0046416]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_007510.1";i:2;s:33:"Burkholderia sp. 383 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"810912-811012";i:6;s:1:"+";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:13:"811149-812397";i:10;s:1:"+";i:11;s:4:"glyA";i:12;s:64:"Serine hydroxymethyltransferase 3 (SHMT 3) (Serine methylase 3) ";i:13;s:15:"Bcep18194_A3895";i:14;s:6:"Operon";i:15;s:6:"149354";i:16;s:43:"Bcep18194_A3895(glyA);Bcep18194_A3896(nrdR)";i:17;s:100:"glycine biosynthetic process from serine [GO:0019264]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_007510.1";i:2;s:33:"Burkholderia sp. 383 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1059690-1059827";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1058285-1058984";i:10;s:1:"+";i:11;s:15:"Bcep18194_A4127";i:12;s:0:"";i:13;s:15:"Bcep18194_A4127";i:14;s:11:"Single gene";i:15;s:7:"1711797";i:16;s:15:"Bcep18194_A4127";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_007510.1";i:2;s:33:"Burkholderia sp. 383 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1285154-1285270";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1283097-1285029";i:10;s:1:"-";i:11;s:15:"Bcep18194_A4331";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:15:"Bcep18194_A4331";i:14;s:11:"Single gene";i:15;s:7:"1711870";i:16;s:15:"Bcep18194_A4331";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_007510.1";i:2;s:33:"Burkholderia sp. 383 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1816304-1816541";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1815384-1816134";i:10;s:1:"-";i:11;s:15:"Bcep18194_A4802";i:12;s:45:"Uroporphyrinogen-III C-methyltransferase (07)";i:13;s:15:"Bcep18194_A4802";i:14;s:6:"Operon";i:15;s:6:"149542";i:16;s:63:"Bcep18194_A4799;Bcep18194_A4800;Bcep18194_A4801;Bcep18194_A4802";i:17;s:84:"oxidation-reduction process [GO:0055114]; siroheme biosynthetic process [GO:0019354]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_007510.1";i:2;s:33:"Burkholderia sp. 383 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1818666-1818932";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1819261-1820350";i:10;s:1:"+";i:11;s:15:"Bcep18194_A4805";i:12;s:32:"Cobalamin synthesis protein/P47K";i:13;s:15:"Bcep18194_A4805";i:14;s:6:"Operon";i:15;s:6:"149544";i:16;s:85:"Bcep18194_A4805;Bcep18194_A4806(cobN);Bcep18194_A4807;Bcep18194_A4808;Bcep18194_A4809";i:17;s:43:"cobalamin biosynthetic process [GO:0009236]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_007510.1";i:2;s:33:"Burkholderia sp. 383 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1841871-1842062";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1840399-1841836";i:10;s:1:"-";i:11;s:15:"Bcep18194_A4824";i:12;s:52:"Nitrite/sulfite reductase; hemoprotein beta subunit ";i:13;s:15:"Bcep18194_A4824";i:14;s:6:"Operon";i:15;s:6:"149547";i:16;s:69:"Bcep18194_A4821;Bcep18194_A4822;Bcep18194_A4823(cobH);Bcep18194_A4824";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_007510.1";i:2;s:33:"Burkholderia sp. 383 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2902037-2902288";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2900879-2901878";i:10;s:1:"-";i:11;s:15:"Bcep18194_A5786";i:12;s:66:"ABC cobalamin/Fe3+-siderophore transporter; inner membrane subunit";i:13;s:15:"Bcep18194_A5786";i:14;s:6:"Operon";i:15;s:6:"149745";i:16;s:91:"Bcep18194_A5782;Bcep18194_A5783(cobS);Bcep18194_A5784(cobT);Bcep18194_A5785;Bcep18194_A5786";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_007510.1";i:2;s:33:"Burkholderia sp. 383 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3151572-3151720";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"3150742-3151453";i:10;s:1:"-";i:11;s:15:"Bcep18194_A6016";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:15:"Bcep18194_A6016";i:14;s:11:"Single gene";i:15;s:7:"1712550";i:16;s:15:"Bcep18194_A6016";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_007510.1";i:2;s:33:"Burkholderia sp. 383 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"4357234-4357280";i:6;s:1:"-";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"4356368-4356902";i:10;s:1:"+";i:11;s:3:"blc";i:12;s:0:"";i:13;s:8:"SBO_4307";i:14;s:6:"Operon";i:15;s:6:"158844";i:16;s:88:"SBO_4302(frdA);SBO_4303(frdB);SBO_4304(frdC);SBO_4305(frdD);SBO_4306(ampC);SBO_4307(blc)";i:17;s:0:"";i:18;s:15:"View Structure ";}}