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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
911609-911787
(+)
FMN
911955-912558 (+)
ribE
Riboflavin synthase; alpha chain
XCV0800
Operon
DOOR ID:
148192
XCV0800
(ribE)
,
XCV0801
(ribB)
View Structure
2
976911-977023
(-)
SAH
975436-976879 (-)
sahH
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
XCV0856
Single gene
DOOR ID:
1709484
XCV0856
(sahH)
View Structure
3
1399366-1399480
(-)
glycine
1396401-1399266 (-)
gcvP
Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
XCV1243
Single gene
DOOR ID:
1709631
XCV1243
(gcvP)
View Structure
4
1589910-1589990
(-)
SAH
1589416-1589671 (-)
XCV1407
XCV1407
Single gene
DOOR ID:
1709694
XCV1407
View Structure
5
2350991-2351059
(+)
fluoride
2351167-2351569 (+)
crcB
Putative fluoride ion transporter CrcB
XCV2061
Operon
DOOR ID:
148476
XCV2061
(crcB)
,
XCV2062
View Structure
6
3610403-3610523
(-)
SAM
3609301-3610333 (-)
XCV3177
Homoserine O-succinyltransferase (HST) (6) (Homoserine transsuccinylase) (HTS)
XCV3177
Operon
DOOR ID:
148711
XCV3175
(metL)
,
XCV3176
(metB)
,
XCV3177
View Structure
7
3801923-3802147
(-)
cobalamin
3799931-3801809 (-)
XCV3323
TonB-dependent outer membrane receptor
XCV3323
Single gene
DOOR ID:
1710417
XCV3323
View Structure
8
4100646-4100743
(-)
TPP
4098676-4100554 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
XCV3575
Single gene
DOOR ID:
1710525
XCV3575
(thiC)
View Structure
9
4924883-4925043
(+)
yybP-ykoY
4925736-4929186 (-)
XCV4292
Two-component system sensor/regulator hybrid protein
XCV4292
Single gene
DOOR ID:
1710850
XCV4292
View Structure
Genome:
Xanthomonas campestris pv. vesicatoria str. 85-10
(
NC_007508.1
);
Phylum:
Gammaproteobacteria
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S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_007508.1";i:2;s:50:"Xanthomonas campestris pv. vesicatoria str. 85-10 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1399366-1399480";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1396401-1399266";i:10;s:1:"-";i:11;s:4:"gcvP";i:12;s:151:"Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))";i:13;s:7:"XCV1243";i:14;s:11:"Single gene";i:15;s:7:"1709631";i:16;s:13:"XCV1243(gcvP)";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_007508.1";i:2;s:50:"Xanthomonas campestris pv. vesicatoria str. 85-10 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1589910-1589990";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"1589416-1589671";i:10;s:1:"-";i:11;s:7:"XCV1407";i:12;s:0:"";i:13;s:7:"XCV1407";i:14;s:11:"Single gene";i:15;s:7:"1709694";i:16;s:7:"XCV1407";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_007508.1";i:2;s:50:"Xanthomonas campestris pv. vesicatoria str. 85-10 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2350991-2351059";i:6;s:1:"+";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"2351167-2351569";i:10;s:1:"+";i:11;s:4:"crcB";i:12;s:38:"Putative fluoride ion transporter CrcB";i:13;s:7:"XCV2061";i:14;s:6:"Operon";i:15;s:6:"148476";i:16;s:21:"XCV2061(crcB);XCV2062";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_007508.1";i:2;s:50:"Xanthomonas campestris pv. vesicatoria str. 85-10 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3610403-3610523";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"3609301-3610333";i:10;s:1:"-";i:11;s:7:"XCV3177";i:12;s:78:"Homoserine O-succinyltransferase (HST) (6) (Homoserine transsuccinylase) (HTS)";i:13;s:7:"XCV3177";i:14;s:6:"Operon";i:15;s:6:"148711";i:16;s:35:"XCV3175(metL);XCV3176(metB);XCV3177";i:17;s:44:"methionine biosynthetic process [GO:0009086]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_007508.1";i:2;s:50:"Xanthomonas campestris pv. vesicatoria str. 85-10 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3801923-3802147";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3799931-3801809";i:10;s:1:"-";i:11;s:7:"XCV3323";i:12;s:38:"TonB-dependent outer membrane receptor";i:13;s:7:"XCV3323";i:14;s:11:"Single gene";i:15;s:7:"1710417";i:16;s:7:"XCV3323";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_007508.1";i:2;s:50:"Xanthomonas campestris pv. vesicatoria str. 85-10 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4100646-4100743";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4098676-4100554";i:10;s:1:"-";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:7:"XCV3575";i:14;s:11:"Single gene";i:15;s:7:"1710525";i:16;s:13:"XCV3575(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_007508.1";i:2;s:50:"Xanthomonas campestris pv. vesicatoria str. 85-10 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4924883-4925043";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"4925736-4929186";i:10;s:1:"-";i:11;s:7:"XCV4292";i:12;s:52:"Two-component system sensor/regulator hybrid protein";i:13;s:7:"XCV4292";i:14;s:11:"Single gene";i:15;s:7:"1710850";i:16;s:7:"XCV4292";i:17;s:0:"";i:18;s:15:"View Structure ";}}
