Genome: Carboxydothermus hydrogenoformans Z-2901 (NC_007503.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 90359-90445 (-)c-di-GMP-I89375-90299 (-)CHY_0103

HD domain protein		CHY_0103operon

DOOR ID: 147499		CHY_0102,
CHY_0103		 View Structure
2 198028-198135 (+)TPP198205-198721 (+)CHY_0230

Probable proton-coupled thiamine transporter YuaJ		CHY_0230Operon

DOOR ID: 147535		CHY_0230,
CHY_0231,
CHY_0232		 View Structure
3 329676-329842 (+)ykoK329909-331145 (+)CHY_0384

MgtE domain protein		CHY_0384Operon

DOOR ID: 147561		CHY_0384,
CHY_0385		 View Structure
4 339229-339421 (+)cobalamin339527-340433 (+)CHY_0397

Iron compound ABC transporter; iron-binding protein		CHY_0397Operon

DOOR ID: 147565		CHY_0395,
CHY_0396,
CHY_0397,
CHY_0398,
CHY_0399		 View Structure
5 415239-415416 (+)cobalamin415511-416573 (+)cobT

Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (NN:DBI PRT) (1) (N(1)-alpha-phosphoribosyltransferase)		CHY_0480Single gene

DOOR ID: 1708422		CHY_0480 (cobT) View Structure
6 423715-423824 (+)glycine423981-425064 (+)gcvT

Aminomethyltransferase (0) (Glycine cleavage system T protein)		CHY_0489Operon

DOOR ID: 147584		CHY_0489 (gcvT),
CHY_0490 (gcvH),
CHY_0491 (gcvPA),
CHY_0492 (gcvPB),
CHY_0493,
CHY_0494,
CHY_0495		 View Structure
7 656843-656956 (+)TPP658049-659339 (+)thiC

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)		CHY_0747Operon

DOOR ID: 147639		CHY_0746,
CHY_0747 (thiC),
CHY_0748 (thiM),
CHY_0749 (thiL),
CHY_0750		 View Structure
8 665247-665434 (+)cobalamin665598-666252 (+)cbiM

Cobalt transport protein CbiM (Energy-coupling factor transporter probable substrate-capture protein CbiM) (ECF transporter S component CbiM)		CHY_0755Operon

DOOR ID: 147641		CHY_0755 (cbiM),
CHY_0756,
CHY_0757,
CHY_0758,
CHY_0759,
CHY_0760 (cbiT),
CHY_0761,
CHY_0762 (cobM),
CHY_0763 (cbiG),
CHY_0764 (cobJ),
CHY_0765 (cobK),
CHY_0766,
CHY_0767 (cobH),
CHY_0768 (cobP),
CHY_0769 (cobQ),
CHY_0770 (cobD),
CHY_0771 (cobB1),
CHY_0772,
CHY_0773		 View Structure
9 711593-711712 (+)MOCO711750-712716 (+)moaA

GTP 3';8-cyclase (2) (Molybdenum cofactor biosynthesis protein A)		CHY_0802Operon

DOOR ID: 147647		CHY_0797,
CHY_0798,
CHY_0799,
CHY_0800 (fdhD),
CHY_0801,
CHY_0802 (moaA),
CHY_0803 (moaC),
CHY_0804,
CHY_0805		 View Structure
10 777679-777763 (+)c-di-GMP-I777832-778693 (+)CHY_0879

Uncharacterized protein		CHY_0879single gene

DOOR ID: 1708672		CHY_0879 View Structure
11 785822-785906 (+)c-di-GMP-I785981-786797 (+)CHY_0886

Methyl-accepting chemotaxis protein		CHY_0886operon

DOOR ID: 147663		CHY_0886,
CHY_0887,
CHY_0888		 View Structure
12 851296-851384 (+)c-di-GMP-I851534-852653 (+)CHY_0962

HDIG domain protein		CHY_0962operon

DOOR ID: 147676		CHY_0962,
CHY_0963 (motA),
CHY_0964,
CHY_0965,
CHY_0966 (cheW1),
CHY_0967 (cheA1),
CHY_0968 (cheB1)		 View Structure
13 875560-875646 (+)c-di-GMP-I875815-876226 (+)flgB

Flagellar basal body rod protein FlgB		CHY_0990operon

DOOR ID: 147679		CHY_0990 (flgB),
CHY_0991 (flgC),
CHY_0992 (fliE),
CHY_0993 (fliF),
CHY_0994 (fliG),
CHY_0995,
CHY_0996 (fliI),
CHY_0997,
CHY_0998,
CHY_0999,
CHY_1000		 View Structure
14 900392-900476 (+)c-di-GMP-I900533-902045 (+)CHY_1021

Uncharacterized protein		CHY_1021operon

DOOR ID: 147681		CHY_1021,
CHY_1022,
CHY_1023		 View Structure
15 906921-907004 (+)c-di-GMP-I907051-907597 (+)CHY_1027

Uncharacterized protein		CHY_1027operon

DOOR ID: 147683		CHY_1027,
CHY_1028 (cheR2),
CHY_1029,
CHY_1030 (cheW2),
CHY_1031 (cheB2),
CHY_1032 (cheY2),
CHY_1033 (cheA2),
CHY_1034		 View Structure
16 1123916-1124037 (+)TPP1124160-1124352 (+)thiS1

Thiamine biosynthesis protein ThiS		CHY_1261Operon

DOOR ID: 147728		CHY_1261 (thiS1),
CHY_1262 (thiG),
CHY_1263 (thiH),
CHY_1264 (moeB),
CHY_1265 (thiE)		 View Structure
17 1316827-1316951 (-)FMN1315670-1316756 (-)ribD

Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]		CHY_1475Operon

DOOR ID: 147769		CHY_1470,
CHY_1471,
CHY_1472 (ribH),
CHY_1473 (ribBA),
CHY_1474 (ribE),
CHY_1475 (ribD)		 View Structure
18 1705024-1705127 (-)SAM1703620-1704886 (-)CHY_1904

O-acetylhomoserine/O-acetylserine sulfhydrylase		CHY_1904Operon

DOOR ID: 147851		CHY_1902,
CHY_1903 (metX),
CHY_1904		 View Structure
19 1746312-1746490 (-)lysine1743745-1744816 (-)CHY_1950

Putative spore germination protein		CHY_1950Operon

DOOR ID: 147862		CHY_1943,
CHY_1944,
CHY_1945 (scpB),
CHY_1946 (scpA),
CHY_1948,
CHY_1949,
CHY_1950		 View Structure
20 1796308-1796458 (-)glmS1795993-1796128 (-)CHY_2011

CHY_2011Single gene

DOOR ID: 1708618		CHY_2011 View Structure
21 1888795-1888854 (-)fluoride1887578-1888739 (-)CHY_2107

Na+/H+ antiporter		CHY_2107Operon

DOOR ID: 147897		CHY_2105,
CHY_2106,
CHY_2107		 View Structure
22 2138046-2138131 (+)glycine2138264-2138660 (+)grdX

GrdX protein		CHY_2388Single gene

DOOR ID: 1708584		CHY_2388 (grdX) View Structure
23 2169874-2169978 (-)SAM2168798-2169812 (-)CHY_2422

Methionine import ATP-binding protein MetN 		CHY_2422Operon

DOOR ID: 147946		CHY_2419,
CHY_2420,
CHY_2421,
CHY_2422		 View Structure
24 2221384-2221513 (-)ydaO-yuaA2220066-2221302 (-)CHY_2479

Putative L-lysine 2;3-aminomutase		CHY_2479Single gene

DOOR ID: 1708962		CHY_2479 View Structure