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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
189244-189441
(-)
lysine
188206-189091 (-)
dapA
4-hydroxy-tetrahydrodipicolinate synthase (HTPA synthase)
PSHAa0180
Operon
DOOR ID:
143401
PSHAa0176,
PSHAa0177,
PSHAa0178
(dcdA)
,
PSHAa0179
(dapD)
,
PSHAa0180
(dapA)
View Structure
2
497084-497196
(+)
TPP
497368-499321 (+)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
PSHAa0480
Operon
DOOR ID:
143462
PSHAa0480
(thiC)
,
PSHAa0481
(thiO)
,
PSHAa0482
(thiS)
,
PSHAa0483
(thiG)
,
PSHAa0484
(thiDE)
,
PSHAa0485
(thiF)
View Structure
3
1283774-1283954
(+)
FMN
1284112-1284766 (+)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
PSHAa1233
Single gene
DOOR ID:
1701595
PSHAa1233
(ribB)
View Structure
4
1303969-1304141
(+)
lysine
1305584-1306328 (-)
PSHAa1251
Putative orphan protein
PSHAa1251
Single gene
DOOR ID:
1701606
PSHAa1251
View Structure
5
2422175-2422340
(-)
cobalamin
2420287-2422138 (-)
PSHAa2275
Putative TonB-dependent Outer membrane receptor
PSHAa2275
Single gene
DOOR ID:
1702051
PSHAa2275
View Structure
6
2713267-2713408
(-)
cobalamin
2712375-2713188 (-)
fhuC
Putative Iron-compound ABC transporter; ATP-binding protein (5)
PSHAa2566
Operon
DOOR ID:
143827
PSHAa2561
(ung)
,
PSHAa2562,
PSHAa2563
(btuR)
,
PSHAa2564
(cobQ)
,
PSHAa2565,
PSHAa2566
(fhuC)
View Structure
Genome:
Pseudoalteromonas haloplanktis TAC125 chromosome I
(
NC_007481.1
);
Phylum:
Gammaproteobacteria
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