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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
62126-62265
(-)
SAH
60669-62091 (-)
ahcY
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
BURPS1710b_0057
Single gene
DOOR ID:
1698530
BURPS1710b_0057
(ahcY)
View Structure
2
132430-132539
(+)
glycine
132805-133924 (+)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
BURPS1710b_0127
Operon
DOOR ID:
142137
BURPS1710b_0127
(gcvT)
,
BURPS1710b_0128
(gcvH)
View Structure
3
132572-132708
(+)
glycine
132805-133924 (+)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
BURPS1710b_0127
Operon
DOOR ID:
142137
BURPS1710b_0127
(gcvT)
,
BURPS1710b_0128
(gcvH)
View Structure
4
929904-930055
(+)
FMN
930194-930917 (+)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
BURPS1710b_0895
Single gene
DOOR ID:
1698449
BURPS1710b_0895
(ribB)
View Structure
5
1230426-1230693
(+)
cobalamin
1232788-1232911 (-)
BURPS1710b_1188
BURPS1710b_1188
Single gene
DOOR ID:
1699563
BURPS1710b_1188
View Structure
6
1616975-1617092
(-)
TPP
1614911-1616969 (+)
BURPS1710b_1529
BURPS1710b_1529
Single gene
DOOR ID:
1698824
BURPS1710b_1529
View Structure
7
1858398-1858450
(-)
mini-ykkC
1858062-1858377 (-)
Pfl01_1666
Pfl01_1666
Single gene
DOOR ID:
1704535
Pfl01_1666
View Structure
8
2283579-2283732
(-)
cobalamin
2282931-2283381 (-)
BURPS1710b_2095
CbiG protein
BURPS1710b_2095
Operon
DOOR ID:
142544
BURPS1710b_2093
(cobB)
,
BURPS1710b_2094
(cobO)
,
BURPS1710b_2095
View Structure
9
2283891-2284150
(+)
cobalamin
2284419-2285550 (+)
hoxN
Nickel/cobalt efflux system
BURPS1710b_2096
Operon
DOOR ID:
142545
BURPS1710b_2096
(hoxN)
,
BURPS1710b_2097
(cobW)
View Structure
10
2312194-2312400
(-)
cobalamin
2310641-2312090 (-)
cobG
Precorrin-3B synthase (3)
BURPS1710b_2113
Operon
DOOR ID:
142548
BURPS1710b_2111
(cobI)
,
BURPS1710b_2112
(cobH)
,
BURPS1710b_2113
(cobG)
View Structure
11
3334847-3334983
(+)
yybP-ykoY
3335059-3335632 (+)
BURPS1710b_3026
Membrane protein; putative
BURPS1710b_3026
Operon
DOOR ID:
142730
BURPS1710b_3023
(guaD)
,
BURPS1710b_3025,
BURPS1710b_3026
View Structure
12
3556908-3557008
(-)
ZMP-ZTP
3555516-3556764 (-)
glyA
Serine hydroxymethyltransferase 1 (SHMT 1) (Serine methylase 1)
BURPS1710b_3250
Operon
DOOR ID:
142772
BURPS1710b_3248
(nrdR)
,
BURPS1710b_3250
(glyA)
View Structure
13
4046797-4046928
(-)
TPP
4045437-4046571 (-)
thiO
Oxidoreductase; FAD-binding
BURPS1710b_3710
Operon
DOOR ID:
142866
BURPS1710b_3709
(thiS)
,
BURPS1710b_3710
(thiO)
View Structure
Genome:
Burkholderia pseudomallei 1710b chromosome I
(
NC_007434.1
);
Phylum:
Betaproteobacteria
a:14:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_007434.1";i:2;s:44:"Burkholderia pseudomallei 1710b chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:11:"62126-62265";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:11:"60669-62091";i:10;s:1:"-";i:11;s:4:"ahcY";i:12;s:73:"Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)";i:13;s:15:"BURPS1710b_0057";i:14;s:11:"Single gene";i:15;s:7:"1698530";i:16;s:21:"BURPS1710b_0057(ahcY)";i:17;s:96:"one-carbon metabolic process [GO:0006730]; S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_007434.1";i:2;s:44:"Burkholderia pseudomallei 1710b chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"132430-132539";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:13:"132805-133924";i:10;s:1:"+";i:11;s:4:"gcvT";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:15:"BURPS1710b_0127";i:14;s:6:"Operon";i:15;s:6:"142137";i:16;s:43:"BURPS1710b_0127(gcvT);BURPS1710b_0128(gcvH)";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_007434.1";i:2;s:44:"Burkholderia pseudomallei 1710b chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"132572-132708";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:13:"132805-133924";i:10;s:1:"+";i:11;s:4:"gcvT";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:15:"BURPS1710b_0127";i:14;s:6:"Operon";i:15;s:6:"142137";i:16;s:43:"BURPS1710b_0127(gcvT);BURPS1710b_0128(gcvH)";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_007434.1";i:2;s:44:"Burkholderia pseudomallei 1710b chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"929904-930055";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"930194-930917";i:10;s:1:"+";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:15:"BURPS1710b_0895";i:14;s:11:"Single gene";i:15;s:7:"1698449";i:16;s:21:"BURPS1710b_0895(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_007434.1";i:2;s:44:"Burkholderia pseudomallei 1710b chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1230426-1230693";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1232788-1232911";i:10;s:1:"-";i:11;s:15:"BURPS1710b_1188";i:12;s:0:"";i:13;s:15:"BURPS1710b_1188";i:14;s:11:"Single gene";i:15;s:7:"1699563";i:16;s:15:"BURPS1710b_1188";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_007434.1";i:2;s:44:"Burkholderia pseudomallei 1710b chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1616975-1617092";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1614911-1616969";i:10;s:1:"+";i:11;s:15:"BURPS1710b_1529";i:12;s:0:"";i:13;s:15:"BURPS1710b_1529";i:14;s:11:"Single gene";i:15;s:7:"1698824";i:16;s:15:"BURPS1710b_1529";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_007434.1";i:2;s:44:"Burkholderia pseudomallei 1710b chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1858398-1858450";i:6;s:1:"-";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"1858062-1858377";i:10;s:1:"-";i:11;s:10:"Pfl01_1666";i:12;s:0:"";i:13;s:10:"Pfl01_1666";i:14;s:11:"Single gene";i:15;s:7:"1704535";i:16;s:10:"Pfl01_1666";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_007434.1";i:2;s:44:"Burkholderia pseudomallei 1710b chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2283579-2283732";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2282931-2283381";i:10;s:1:"-";i:11;s:15:"BURPS1710b_2095";i:12;s:12:"CbiG protein";i:13;s:15:"BURPS1710b_2095";i:14;s:6:"Operon";i:15;s:6:"142544";i:16;s:59:"BURPS1710b_2093(cobB);BURPS1710b_2094(cobO);BURPS1710b_2095";i:17;s:43:"cobalamin biosynthetic process [GO:0009236]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_007434.1";i:2;s:44:"Burkholderia pseudomallei 1710b chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2283891-2284150";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2284419-2285550";i:10;s:1:"+";i:11;s:4:"hoxN";i:12;s:27:"Nickel/cobalt efflux system";i:13;s:15:"BURPS1710b_2096";i:14;s:6:"Operon";i:15;s:6:"142545";i:16;s:43:"BURPS1710b_2096(hoxN);BURPS1710b_2097(cobW)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_007434.1";i:2;s:44:"Burkholderia pseudomallei 1710b chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2312194-2312400";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2310641-2312090";i:10;s:1:"-";i:11;s:4:"cobG";i:12;s:25:"Precorrin-3B synthase (3)";i:13;s:15:"BURPS1710b_2113";i:14;s:6:"Operon";i:15;s:6:"142548";i:16;s:65:"BURPS1710b_2111(cobI);BURPS1710b_2112(cobH);BURPS1710b_2113(cobG)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_007434.1";i:2;s:44:"Burkholderia pseudomallei 1710b chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3334847-3334983";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"3335059-3335632";i:10;s:1:"+";i:11;s:15:"BURPS1710b_3026";i:12;s:26:"Membrane protein; putative";i:13;s:15:"BURPS1710b_3026";i:14;s:6:"Operon";i:15;s:6:"142730";i:16;s:53:"BURPS1710b_3023(guaD);BURPS1710b_3025;BURPS1710b_3026";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_007434.1";i:2;s:44:"Burkholderia pseudomallei 1710b chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3556908-3557008";i:6;s:1:"-";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:15:"3555516-3556764";i:10;s:1:"-";i:11;s:4:"glyA";i:12;s:64:"Serine hydroxymethyltransferase 1 (SHMT 1) (Serine methylase 1) ";i:13;s:15:"BURPS1710b_3250";i:14;s:6:"Operon";i:15;s:6:"142772";i:16;s:43:"BURPS1710b_3248(nrdR);BURPS1710b_3250(glyA)";i:17;s:100:"glycine biosynthetic process from serine [GO:0019264]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_007434.1";i:2;s:44:"Burkholderia pseudomallei 1710b chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"4046797-4046928";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4045437-4046571";i:10;s:1:"-";i:11;s:4:"thiO";i:12;s:27:"Oxidoreductase; FAD-binding";i:13;s:15:"BURPS1710b_3710";i:14;s:6:"Operon";i:15;s:6:"142866";i:16;s:43:"BURPS1710b_3709(thiS);BURPS1710b_3710(thiO)";i:17;s:43:"D-amino acid metabolic process [GO:0046416]";i:18;s:15:"View Structure ";}}
