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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
118149-118230
(+)
fluoride
118325-119957 (+)
Ava_0089
Sodium/proton antiporter; CPA1 family
Ava_0089
Single gene
DOOR ID:
1691058
Ava_0089
View Structure
2
327616-327793
(+)
cobalamin
327809-328202 (+)
Ava_0255
Ava_0255
Single gene
DOOR ID:
1691224
Ava_0255
View Structure
3
459782-459878
(+)
TPP
459885-461259 (+)
Ava_0357
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Ava_0357
Single gene
DOOR ID:
1691326
Ava_0357
View Structure
4
1069075-1069299
(+)
ydaO-yuaA
1069396-1070248 (+)
Ava_0874
Nitrate transport permease
Ava_0874
Single gene
DOOR ID:
1691840
Ava_0874
View Structure
5
1072645-1072868
(+)
ydaO-yuaA
1072922-1073630 (+)
Ava_0877
Ava_0877
Single gene
DOOR ID:
1691843
Ava_0877
View Structure
6
1722946-1723158
(+)
ydaO-yuaA
1723758-1724001 (+)
Ava_1395
Ava_1395
Single gene
DOOR ID:
1692359
Ava_1395
View Structure
7
3562697-3562827
(-)
cobalamin
3559813-3560518 (-)
Ava_2865
Precorrin-2 C20-methyltransferase / cobalt-factor II C20-methyltransferase (51)
Ava_2865
Single gene
DOOR ID:
1693817
Ava_2865
View Structure
8
4238140-4238290
(-)
ydaO-yuaA
4236710-4237988 (-)
Ava_3411
Glycosyl transferase; group 1 (1)
Ava_3411
Single gene
DOOR ID:
1694356
Ava_3411
View Structure
Genome:
Anabaena variabilis ATCC 29413
(
NC_007413.1
);
Phylum:
Cyanobacteria/Melainabacteria group
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